Variant report

Variant	rs7788815
Chromosome Location	chr7:127922038-127922039
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127912261..127914100-chr7:127920711..127922537,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM28-1	chr7:127921866-127922567	NONHSAT123176

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1982402	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2084652	0.87[AFR][1000 genomes]
rs28959470	1.00[AMR][1000 genomes]
rs359653	1.00[AMR][1000 genomes]
rs359654	1.00[AMR][1000 genomes]
rs359656	1.00[AMR][1000 genomes]
rs359657	1.00[AMR][1000 genomes]
rs4728102	1.00[AMR][1000 genomes]
rs6467172	1.00[AMR][1000 genomes]
rs6954888	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972262	1.00[AMR][1000 genomes]
rs6979643	1.00[AMR][1000 genomes]
rs7811392	1.00[AMR][1000 genomes]
rs921398	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9649515	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127912200-127925200	Weak transcription	Ovary	ovary
2	chr7:127917000-127945600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:127917200-127943200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:127919800-127926400	Weak transcription	Liver	Liver
5	chr7:127920200-127945200	Weak transcription	Right Ventricle	heart
6	chr7:127920600-127938800	Weak transcription	Right Atrium	heart
7	chr7:127920600-127941000	Weak transcription	Primary T cells from cord blood	blood
8	chr7:127920800-127931000	Weak transcription	Fetal Lung	lung
9	chr7:127921000-127926000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:127921400-127922400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:127921400-127939000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:127921600-127922200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:127921600-127922200	Enhancers	Brain Germinal Matrix	brain
14	chr7:127921600-127922200	Enhancers	Brain Hippocampus Middle	brain
15	chr7:127921600-127922200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr7:127921600-127922200	Enhancers	Brain Substantia Nigra	brain
17	chr7:127921600-127922200	ZNF genes & repeats	Lung	lung
18	chr7:127921600-127922200	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:127921600-127922200	ZNF genes & repeats	Dnd41	blood
20	chr7:127921600-127922400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:127921600-127922400	ZNF genes & repeats	Aorta	Aorta
22	chr7:127921600-127928400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:127921800-127922200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:127921800-127922200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:127921800-127922200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:127921800-127922200	Enhancers	Esophagus	oesophagus
27	chr7:127921800-127923600	Weak transcription	HSMMtube	muscle
28	chr7:127921800-127926000	Weak transcription	Fetal Stomach	stomach
29	chr7:127921800-127944400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:127922000-127922400	ZNF genes & repeats	Pancreas	Pancrea
31	chr7:127922000-127926200	Weak transcription	HSMM	muscle
32	chr7:127922000-127940600	Weak transcription	Brain Anterior Caudate	brain
33	chr7:127922000-127942000	Weak transcription	Brain Angular Gyrus	brain
34	chr7:127922000-127944400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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