Variant report

Variant rs35971619
Chromosome Location chr6:53661775-53661776
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:53657800-53662400 Active TSS Pancreatic Islets Pancreatic Islet
2 chr6:53658000-53662000 Active TSS Duodenum Smooth Muscle Duodenum
3 chr6:53658600-53661800 Active TSS Brain Hippocampus Middle brain
4 chr6:53659000-53662000 Active TSS Brain Inferior Temporal Lobe brain
5 chr6:53660200-53661800 Flanking Active TSS Duodenum Mucosa Duodenum
6 chr6:53660400-53662000 Flanking Active TSS HUVEC blood vessel
7 chr6:53660400-53663000 Flanking Active TSS Dnd41 blood
8 chr6:53660600-53661800 Flanking Active TSS Stomach Smooth Muscle stomach
9 chr6:53660800-53661800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
10 chr6:53660800-53661800 Active TSS Placenta Placenta
11 chr6:53660800-53661800 Flanking Active TSS Hela-S3 cervix
12 chr6:53660800-53662800 Active TSS Rectal Smooth Muscle rectum
13 chr6:53660800-53663000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr6:53661000-53661800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
15 chr6:53661000-53662200 Flanking Active TSS HMEC breast
16 chr6:53661200-53661800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
17 chr6:53661200-53662000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr6:53661200-53662200 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr6:53661200-53662400 Flanking Active TSS NHEK skin
20 chr6:53661200-53662600 Active TSS Fetal Brain Female brain
21 chr6:53661400-53661800 Flanking Active TSS Brain Germinal Matrix brain
22 chr6:53661400-53661800 Flanking Active TSS Brain Substantia Nigra brain
23 chr6:53661400-53661800 Flanking Active TSS Colon Smooth Muscle Colon
24 chr6:53661400-53661800 Active TSS Fetal Thymus thymus
25 chr6:53661400-53662000 Enhancers Placenta Amnion Placenta Amnion
26 chr6:53661400-53662200 Weak transcription Esophagus oesophagus
27 chr6:53661400-53662200 Weak transcription Pancreas Pancrea
28 chr6:53661400-53662600 Flanking Active TSS HepG2 liver
29 chr6:53661400-53662800 Active TSS Rectal Mucosa Donor 29 rectum
30 chr6:53661400-53663600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr6:53661400-53666400 Weak transcription Primary B cells from cord blood blood
32 chr6:53661400-53666600 Weak transcription Aorta Aorta
33 chr6:53661400-53667200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr6:53661400-53668000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr6:53661400-53668000 Weak transcription Ovary ovary
36 chr6:53661400-53669800 Weak transcription Gastric stomach
37 chr6:53661400-53670400 Weak transcription Primary T cells from cord blood blood
38 chr6:53661400-53675600 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr6:53661400-53688200 Weak transcription Right Ventricle heart
40 chr6:53661600-53661800 Bivalent Enhancer hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr6:53661600-53661800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
42 chr6:53661600-53661800 Active TSS HSMMtube muscle
43 chr6:53661600-53662000 Flanking Active TSS Fetal Intestine Large intestine
44 chr6:53661600-53662000 Weak transcription Small Intestine intestine
45 chr6:53661600-53662000 Weak transcription Thymus Thymus
46 chr6:53661600-53662200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
47 chr6:53661600-53662200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr6:53661600-53662200 Enhancers Muscle Satellite Cultured Cells --
49 chr6:53661600-53662200 Flanking Active TSS Brain Cingulate Gyrus brain
50 chr6:53661600-53662200 Enhancers Rectal Mucosa Donor 31 rectum

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