Variant report

Variant	rs35986726
Chromosome Location	chr4:173922246-173922247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173920950..173922702-chr4:174369594..174372283,2	K562	blood:
2	chr4:173921400..173924253-chr4:173927947..173929574,3	K562	blood:
3	chr4:173918685..173922576-chr4:174253397..174256418,3	K562	blood:
4	chr4:173921645..173924242-chr4:173924722..173926710,2	K562	blood:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11728445	1.00[AFR][1000 genomes]
rs34215795	1.00[AFR][1000 genomes]
rs62343177	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173920000-173922800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:173920400-173923000	Weak transcription	Aorta	Aorta
4	chr4:173920400-173923200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:173920600-173922800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:173920600-173923000	Weak transcription	NHLF	lung
7	chr4:173920600-173923200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:173920600-173923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:173920600-173927200	Weak transcription	Esophagus	oesophagus
10	chr4:173920600-173927200	Weak transcription	A549	lung
11	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:173920800-173922400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:173920800-173922400	Weak transcription	HSMM	muscle
14	chr4:173920800-173922600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:173920800-173922600	Weak transcription	Osteobl	bone
16	chr4:173921600-173923600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:173921800-173923400	Enhancers	Hela-S3	cervix
18	chr4:173922000-173923400	Enhancers	HMEC	breast
19	chr4:173922000-173923400	Enhancers	NH-A	brain
20	chr4:173922000-173923400	Enhancers	NHEK	skin
21	chr4:173922200-173922400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:173922200-173922800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:173922200-173923200	Enhancers	NHDF-Ad	bronchial
24	chr4:173922200-173923400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:173922200-173923400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:173922200-173923400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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