Variant report

Variant	rs11728445
Chromosome Location	chr4:174042203-174042204
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10012945	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10022143	0.84[EUR][1000 genomes]
rs11725123	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11725185	1.00[EUR][1000 genomes]
rs11725544	0.97[EUR][1000 genomes]
rs11737666	0.98[EUR][1000 genomes]
rs11737713	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13114380	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13120298	0.98[EUR][1000 genomes]
rs13121054	0.97[EUR][1000 genomes]
rs13125078	0.98[EUR][1000 genomes]
rs13125357	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13131149	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13132608	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13138296	1.00[EUR][1000 genomes]
rs13147948	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17255483	0.93[CEU][hapmap]
rs28709360	0.98[EUR][1000 genomes]
rs28735865	1.00[EUR][1000 genomes]
rs34155242	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34215795	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35986726	1.00[AFR][1000 genomes]
rs3966013	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4314263	0.89[EUR][1000 genomes]
rs60568577	0.98[EUR][1000 genomes]
rs62341067	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62341069	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62343177	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71609810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7679498	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174039200-174042400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:174040600-174042800	Enhancers	HMEC	breast
3	chr4:174040600-174044200	Enhancers	NHEK	skin
4	chr4:174040600-174044400	Enhancers	Stomach Mucosa	stomach
5	chr4:174040800-174043000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:174040800-174044600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:174041000-174043000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:174041000-174044200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:174041000-174044200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr4:174041200-174042800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:174041200-174044200	Enhancers	Hela-S3	cervix
12	chr4:174041400-174042800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:174041400-174044600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr4:174041600-174044000	Enhancers	Dnd41	blood
15	chr4:174041600-174044200	Enhancers	Fetal Thymus	thymus
16	chr4:174041600-174044400	Enhancers	Thymus	Thymus
17	chr4:174041800-174042400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:174041800-174044000	Enhancers	Fetal Muscle Leg	muscle
19	chr4:174042000-174043000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:174042000-174044000	Enhancers	K562	blood
21	chr4:174042200-174042400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:174042200-174042400	Enhancers	Esophagus	oesophagus
23	chr4:174042200-174042400	Enhancers	Fetal Muscle Trunk	muscle
24	chr4:174042200-174042400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr4:174042200-174042600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr4:174042200-174042600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:174042200-174042600	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr4:174042200-174042600	Enhancers	Primary T cells from cord blood	blood
29	chr4:174042200-174042600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr4:174042200-174042600	Enhancers	Adipose Nuclei	Adipose
31	chr4:174042200-174042600	Enhancers	Fetal Intestine Small	intestine
32	chr4:174042200-174042600	Enhancers	Placenta	Placenta
33	chr4:174042200-174042600	Enhancers	NH-A	brain
34	chr4:174042200-174042800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr4:174042200-174042800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:174042200-174042800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr4:174042200-174042800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr4:174042200-174042800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr4:174042200-174042800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:174042200-174042800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr4:174042200-174042800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:174042200-174042800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:174042200-174042800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr4:174042200-174042800	Enhancers	Duodenum Mucosa	Duodenum
45	chr4:174042200-174042800	Enhancers	Fetal Lung	lung
46	chr4:174042200-174043000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:174042200-174043000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr4:174042200-174043000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:174042200-174043000	Enhancers	GM12878-XiMat	blood
50	chr4:174042200-174043000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links