Variant report

Variant	rs17255483
Chromosome Location	chr4:173959313-173959314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173958508..173961349-chr4:174209739..174212375,2	MCF-7	breast:
2	chr4:173956885..173959440-chr4:173990470..173992727,2	MCF-7	breast:
3	chr4:173958437..173960994-chr4:173973406..173975836,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10012945	0.93[CEU][hapmap]
rs11725123	0.82[EUR][1000 genomes]
rs13114380	0.81[EUR][1000 genomes]
rs13125357	0.81[EUR][1000 genomes]
rs13131149	0.82[EUR][1000 genomes]
rs13132608	0.83[EUR][1000 genomes]
rs13147948	0.93[CEU][hapmap]
rs3966013	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173950400-173959400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:173951200-173960400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:173955800-173959400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:173957200-173961000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:173957800-173960000	Enhancers	Stomach Mucosa	stomach
6	chr4:173958000-173959600	Weak transcription	A549	lung
7	chr4:173958200-173959400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr4:173958200-173959600	Enhancers	Fetal Intestine Small	intestine
9	chr4:173958400-173959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:173958400-173959400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:173958400-173959600	Weak transcription	Small Intestine	intestine
12	chr4:173958800-173961800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:173959200-173959400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:173959200-173959600	Enhancers	Gastric	stomach
15	chr4:173959200-173960400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:173959200-173960600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:173959200-173960600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:173959200-173961000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:173959200-173961600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:173959200-173961800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:173959200-173961800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:173959200-173961800	Enhancers	Brain Germinal Matrix	brain
23	chr4:173959200-173962000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:173959200-173962000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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