Variant report

Variant	rs11725123
Chromosome Location	chr4:173996293-173996294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10012945	1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022143	1.00[ASN][1000 genomes]
rs11725185	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725544	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728445	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11737666	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737713	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114380	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120298	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13121054	1.00[ASN][1000 genomes]
rs13125078	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125357	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132608	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138296	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147948	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17255483	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs28709360	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735865	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155242	0.82[EUR][1000 genomes]
rs34215795	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3966013	1.00[CEU][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs60568577	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341067	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341069	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62343177	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71609810	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679498	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173992800-173996800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:173993200-173996600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:173993200-173996600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:173994200-173996400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:173994200-173997000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:173994600-173996600	Enhancers	Stomach Mucosa	stomach
7	chr4:173994600-173996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:173995200-173996400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:173995200-173996600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:173995200-173996600	Enhancers	NHEK	skin
11	chr4:173995200-173996800	Enhancers	HMEC	breast
12	chr4:173995200-173999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:173995400-173996600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:173995600-173996400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:173995800-173996400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:173996000-173997600	Weak transcription	NHDF-Ad	bronchial
17	chr4:173996200-173996400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:173996200-173996800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:173996200-173998400	Weak transcription	HSMM	muscle
20	chr4:173996200-173998400	Weak transcription	HSMMtube	muscle
21	chr4:173996200-173998400	Weak transcription	NH-A	brain

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