Variant report

Variant	rs13125357
Chromosome Location	chr4:174018584-174018585
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10012945	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022143	1.00[ASN][1000 genomes]
rs11725123	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725185	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725544	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728445	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11737666	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737713	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120298	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13121054	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125078	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131149	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132608	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138296	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147948	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17255483	0.81[EUR][1000 genomes]
rs28709360	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735865	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155242	0.83[EUR][1000 genomes]
rs34215795	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3966013	0.83[EUR][1000 genomes]
rs60568577	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341067	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341069	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62343177	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71609810	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679498	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174007600-174020400	Weak transcription	Stomach Mucosa	stomach
2	chr4:174014200-174019000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:174016200-174027800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:174016600-174020800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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