Variant report

Variant	rs35988674
Chromosome Location	chr7:137628800-137628801
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137627790..137630235-chr7:137645055..137648680,3	K562	blood:
2	chr7:137624157..137626644-chr7:137626697..137629114,2	K562	blood:
3	chr7:137620870..137622447-chr7:137627955..137630199,2	K562	blood:
4	chr7:137627223..137629575-chr7:137685502..137688202,2	K562	blood:
5	chr7:137627051..137629539-chr7:137676163..137677717,2	K562	blood:

Variant related genes	Relation type
ENSG00000182158	Chromatin interaction
ENSG00000122787	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10224250	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488443	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12533090	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536683	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240473	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13245803	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471436	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17183616	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190292	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17275136	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100060	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34786382	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34814437	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34878104	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924702	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35503163	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35615147	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36086400	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732274	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765857	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777412	0.82[AMR][1000 genomes]
rs7812168	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137615600-137635600	Weak transcription	Hela-S3	cervix
2	chr7:137618200-137637200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:137621200-137638000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:137621800-137629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:137621800-137633800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:137622000-137643000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:137622200-137636600	Weak transcription	Esophagus	oesophagus
9	chr7:137622200-137638200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:137622200-137643200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:137622400-137638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:137624000-137628800	Enhancers	Ovary	ovary
13	chr7:137624000-137629000	Enhancers	Fetal Heart	heart
14	chr7:137624000-137629200	Enhancers	Placenta	Placenta
15	chr7:137624000-137629400	Enhancers	Fetal Intestine Large	intestine
16	chr7:137624200-137629400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:137624200-137633400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:137624400-137629200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:137624400-137629400	Enhancers	Fetal Intestine Small	intestine
20	chr7:137624600-137629200	Enhancers	Stomach Mucosa	stomach
21	chr7:137624800-137629400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr7:137625000-137629000	Enhancers	Small Intestine	intestine
23	chr7:137625200-137629200	Enhancers	Pancreas	Pancrea
24	chr7:137625400-137628800	Enhancers	Psoas Muscle	Psoas
25	chr7:137625400-137629000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr7:137625800-137629400	Enhancers	Colon Smooth Muscle	Colon
27	chr7:137625800-137637200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:137625800-137638200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:137626000-137629000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr7:137626000-137629200	Enhancers	Fetal Stomach	stomach
31	chr7:137626000-137629800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:137626000-137632800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:137626000-137637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:137626000-137637000	Weak transcription	NHEK	skin
35	chr7:137626000-137646200	Weak transcription	HMEC	breast
36	chr7:137626200-137629400	Enhancers	Rectal Smooth Muscle	rectum
37	chr7:137626400-137630800	Weak transcription	Gastric	stomach
38	chr7:137626400-137631800	Weak transcription	Lung	lung
39	chr7:137626400-137637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:137626400-137637400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr7:137626800-137628800	Enhancers	Brain Hippocampus Middle	brain
42	chr7:137626800-137629400	Enhancers	Brain Cingulate Gyrus	brain
43	chr7:137626800-137631400	Enhancers	Stomach Smooth Muscle	stomach
44	chr7:137627000-137628800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:137627000-137629000	Enhancers	Adipose Nuclei	Adipose
46	chr7:137627000-137629200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:137627000-137629200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr7:137627000-137629400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:137627000-137629400	Enhancers	NHDF-Ad	bronchial
50	chr7:137627200-137628800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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