Variant report

Variant	rs36086400
Chromosome Location	chr7:137627219-137627220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137624157..137626644-chr7:137626697..137629114,2	K562	blood:
2	chr7:137627051..137629539-chr7:137676163..137677717,2	K562	blood:
3	chr7:137626054..137628754-chr7:137635805..137637429,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10224250	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488443	0.82[ASN][1000 genomes]
rs12533090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536683	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228781	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13245803	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471436	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17183616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17275136	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100060	0.81[AFR][1000 genomes]
rs34786382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34814437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34878104	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924702	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35503163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35615147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988674	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732274	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765857	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777412	0.83[AMR][1000 genomes]
rs7812168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137615600-137635600	Weak transcription	Hela-S3	cervix
2	chr7:137617200-137627400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:137618200-137637200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:137618600-137627600	Weak transcription	A549	lung
5	chr7:137618600-137628000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:137619400-137628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:137621200-137638000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:137621800-137628600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:137621800-137629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:137621800-137633800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:137622000-137627400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:137622000-137627400	Weak transcription	Brain Angular Gyrus	brain
14	chr7:137622000-137627600	Weak transcription	Primary B cells from cord blood	blood
15	chr7:137622000-137627600	Weak transcription	Colonic Mucosa	Colon
16	chr7:137622000-137627600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:137622000-137643000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr7:137622200-137627600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:137622200-137627800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:137622200-137628000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:137622200-137628000	Weak transcription	Fetal Lung	lung
22	chr7:137622200-137628000	Weak transcription	HUVEC	blood vessel
23	chr7:137622200-137636600	Weak transcription	Esophagus	oesophagus
24	chr7:137622200-137638200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:137622200-137643200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr7:137622400-137627400	Weak transcription	Brain Substantia Nigra	brain
27	chr7:137622400-137627800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:137622400-137627800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:137622400-137628600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:137622400-137638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr7:137623000-137627800	Weak transcription	GM12878-XiMat	blood
32	chr7:137623000-137628200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:137623800-137628200	Enhancers	Fetal Muscle Leg	muscle
34	chr7:137624000-137628800	Enhancers	Ovary	ovary
35	chr7:137624000-137629000	Enhancers	Fetal Heart	heart
36	chr7:137624000-137629200	Enhancers	Placenta	Placenta
37	chr7:137624000-137629400	Enhancers	Fetal Intestine Large	intestine
38	chr7:137624200-137629400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:137624200-137633400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:137624400-137629200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr7:137624400-137629400	Enhancers	Fetal Intestine Small	intestine
42	chr7:137624600-137627400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:137624600-137629200	Enhancers	Stomach Mucosa	stomach
44	chr7:137624800-137628200	Enhancers	HSMMtube	muscle
45	chr7:137624800-137629400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr7:137625000-137627800	Enhancers	Right Ventricle	heart
47	chr7:137625000-137629000	Enhancers	Small Intestine	intestine
48	chr7:137625200-137629200	Enhancers	Pancreas	Pancrea
49	chr7:137625400-137628200	Genic enhancers	K562	blood
50	chr7:137625400-137628800	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links