Variant report

Variant	rs35996190
Chromosome Location	chr10:90618468-90618469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90610122..90612482-chr10:90616857..90620431,4	MCF-7	breast:
2	chr10:90609060..90611863-chr10:90617092..90620453,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152766	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10509555	1.00[EUR][1000 genomes]
rs10509556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509558	1.00[EUR][1000 genomes]
rs10509559	1.00[EUR][1000 genomes]
rs11202885	1.00[EUR][1000 genomes]
rs12242274	1.00[EUR][1000 genomes]
rs12243282	1.00[EUR][1000 genomes]
rs12243621	1.00[EUR][1000 genomes]
rs12245525	1.00[EUR][1000 genomes]
rs12245668	1.00[EUR][1000 genomes]
rs12254451	1.00[EUR][1000 genomes]
rs12257540	1.00[EUR][1000 genomes]
rs12260572	1.00[EUR][1000 genomes]
rs12263461	1.00[EUR][1000 genomes]
rs12413277	1.00[EUR][1000 genomes]
rs12414800	1.00[EUR][1000 genomes]
rs17113311	1.00[EUR][1000 genomes]
rs17113344	1.00[EUR][1000 genomes]
rs17113363	1.00[EUR][1000 genomes]
rs17113426	1.00[EUR][1000 genomes]
rs17113457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17113476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17113724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17114000	1.00[EUR][1000 genomes]
rs17114016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17114020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17114024	1.00[EUR][1000 genomes]
rs17114057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2231780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2231785	1.00[EUR][1000 genomes]
rs2231786	1.00[EUR][1000 genomes]
rs2282122	1.00[EUR][1000 genomes]
rs3814691	1.00[EUR][1000 genomes]
rs3898173	1.00[EUR][1000 genomes]
rs3898174	1.00[EUR][1000 genomes]
rs56998609	1.00[EUR][1000 genomes]
rs58673564	1.00[EUR][1000 genomes]
rs58986570	1.00[EUR][1000 genomes]
rs59661152	1.00[EUR][1000 genomes]
rs60349051	1.00[EUR][1000 genomes]
rs60523093	1.00[EUR][1000 genomes]
rs7077019	1.00[EUR][1000 genomes]
rs7090604	1.00[EUR][1000 genomes]
rs7098246	1.00[EUR][1000 genomes]
rs72474859	0.96[ASN][1000 genomes]
rs73364839	1.00[EUR][1000 genomes]
rs73364841	1.00[EUR][1000 genomes]
rs73364851	1.00[EUR][1000 genomes]
rs7913997	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90612600-90618800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:90614600-90620800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:90614800-90618600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:90616600-90618800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:90616600-90620200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:90617400-90619000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:90617400-90619000	Enhancers	Fetal Intestine Large	intestine
8	chr10:90617400-90621600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:90617600-90619000	Enhancers	Fetal Intestine Small	intestine
10	chr10:90617600-90619000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:90618000-90618800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:90618000-90619000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:90618000-90619000	Enhancers	NHEK	skin
14	chr10:90618200-90619000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:90618400-90618800	Enhancers	Stomach Mucosa	stomach
16	chr10:90618400-90619000	Enhancers	Fetal Heart	heart
17	chr10:90618400-90619000	Enhancers	HMEC	breast

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