Variant report

Variant	rs17113724
Chromosome Location	chr10:90625271-90625272
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:90594917..90596080-chr10:90624854..90626535,16	MCF-7	breast:
2	chr10:90624577..90627466-chr10:90633159..90635774,2	MCF-7	breast:
3	chr10:90613391..90615611-chr10:90625123..90629011,3	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10509555	1.00[EUR][1000 genomes]
rs10509556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10509558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245525	1.00[EUR][1000 genomes]
rs12245668	1.00[EUR][1000 genomes]
rs12247227	0.86[ASN][1000 genomes]
rs12254451	1.00[EUR][1000 genomes]
rs12257540	1.00[EUR][1000 genomes]
rs12260572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261664	0.86[ASN][1000 genomes]
rs12263461	1.00[EUR][1000 genomes]
rs12413277	1.00[EUR][1000 genomes]
rs12414800	1.00[EUR][1000 genomes]
rs17113311	1.00[EUR][1000 genomes]
rs17113344	1.00[EUR][1000 genomes]
rs17113363	1.00[EUR][1000 genomes]
rs17113426	1.00[EUR][1000 genomes]
rs17113457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17113942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282122	1.00[EUR][1000 genomes]
rs35996190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3814691	1.00[EUR][1000 genomes]
rs3898173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3898174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56998609	1.00[EUR][1000 genomes]
rs58673564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58986570	1.00[EUR][1000 genomes]
rs59661152	1.00[EUR][1000 genomes]
rs60349051	1.00[EUR][1000 genomes]
rs60523093	1.00[EUR][1000 genomes]
rs7070713	0.81[ASN][1000 genomes]
rs7077019	1.00[EUR][1000 genomes]
rs7090604	1.00[EUR][1000 genomes]
rs7098246	1.00[EUR][1000 genomes]
rs73364839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74150103	0.86[ASN][1000 genomes]
rs7913997	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90625000-90625400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:90625000-90625400	Enhancers	Esophagus	oesophagus
3	chr10:90625000-90625400	Enhancers	HMEC	breast
4	chr10:90625000-90625400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr10:90625000-90625600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:90625000-90625600	Enhancers	NHEK	skin
7	chr10:90625000-90626000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:90625000-90626000	Enhancers	Fetal Lung	lung
9	chr10:90625000-90626600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:90625200-90626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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