Variant report

Variant	rs12247227
Chromosome Location	chr10:90635819-90635820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90634887..90637855-chr10:90638729..90640945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138134	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10509558	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs10509559	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs10509560	0.88[CHB][hapmap]
rs11202875	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11202885	0.86[ASN][1000 genomes]
rs11202906	0.88[CHB][hapmap]
rs11202907	0.88[CHB][hapmap]
rs12242274	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs12243282	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs12243621	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs12260572	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs12261664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262461	0.88[CHB][hapmap]
rs12264840	0.88[CHB][hapmap]
rs17113724	0.86[ASN][1000 genomes]
rs17113812	1.00[EUR][1000 genomes]
rs17113942	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17113959	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17114000	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17114016	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17114020	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17114024	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17114057	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs17114116	0.88[CHB][hapmap]
rs17114143	0.88[CHB][hapmap]
rs17114186	0.88[CHB][hapmap]
rs17114283	0.88[CHB][hapmap]
rs2119685	0.88[CHB][hapmap]
rs2231780	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2231785	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2231786	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs3781206	0.88[CHB][hapmap]
rs3781208	0.88[CHB][hapmap]
rs3816245	0.88[CHB][hapmap]
rs3898173	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs3898174	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs58673564	0.86[ASN][1000 genomes]
rs7070713	0.88[CHB][hapmap]
rs7078383	0.88[CHB][hapmap]
rs7085698	0.88[CHB][hapmap]
rs7090631	0.88[CHB][hapmap]
rs7098235	0.88[CHB][hapmap]
rs73364839	0.86[ASN][1000 genomes]
rs73364841	0.86[ASN][1000 genomes]
rs73364851	0.86[ASN][1000 genomes]
rs74147301	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74150103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74150104	1.00[EUR][1000 genomes]
rs7897521	0.88[CHB][hapmap]
rs7899463	1.00[EUR][1000 genomes]
rs7908124	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7908852	0.88[CHB][hapmap]
rs7911566	1.00[EUR][1000 genomes]
rs7915393	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90630200-90639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:90633800-90637400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:90634800-90638000	Weak transcription	NHLF	lung
4	chr10:90635000-90639200	Weak transcription	Fetal Heart	heart
5	chr10:90635000-90639400	Weak transcription	Ovary	ovary

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