Variant report

Variant	rs7899463
Chromosome Location	chr10:90634716-90634717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:90634628-90635273	H1-neurons	neurons:	n/a	n/a
2	REST	chr10:90634669-90635153	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90624577..90627466-chr10:90633159..90635774,2	MCF-7	breast:

Variant related genes	Relation type
PTCD2P2	TF binding region
STAMBPL1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11202875	1.00[CEU][hapmap]
rs12242191	1.00[CEU][hapmap]
rs12245525	0.86[ASN][1000 genomes]
rs12245668	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs12247227	1.00[EUR][1000 genomes]
rs12254451	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12261664	1.00[EUR][1000 genomes]
rs12263461	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12264840	1.00[CEU][hapmap]
rs17096285	1.00[CEU][hapmap]
rs17113812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114120	1.00[CEU][hapmap]
rs17114186	1.00[CEU][hapmap]
rs2147416	1.00[CEU][hapmap]
rs3758487	1.00[CEU][hapmap]
rs4145761	0.87[ASN][1000 genomes]
rs7077019	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7077534	1.00[CEU][hapmap]
rs7077956	1.00[CEU][hapmap]
rs7090604	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7098246	0.87[ASN][1000 genomes]
rs74147302	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74150103	1.00[EUR][1000 genomes]
rs74150104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913997	0.94[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90630200-90639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:90633400-90635000	Enhancers	Fetal Lung	lung
3	chr10:90633800-90637400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:90634200-90635000	Enhancers	Fetal Heart	heart
5	chr10:90634600-90634800	Enhancers	NHLF	lung
6	chr10:90634600-90635000	Enhancers	Ovary	ovary

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