Variant report

Variant	rs7911566
Chromosome Location	chr10:90633056-90633057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11202875	1.00[CEU][hapmap]
rs12242191	1.00[CEU][hapmap]
rs12245525	0.86[ASN][1000 genomes]
rs12245668	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs12247227	1.00[EUR][1000 genomes]
rs12254451	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12261664	1.00[EUR][1000 genomes]
rs12263461	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12264840	1.00[CEU][hapmap]
rs1441742	0.85[AFR][1000 genomes]
rs17096285	1.00[CEU][hapmap]
rs17113812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114120	1.00[CEU][hapmap]
rs17114186	1.00[CEU][hapmap]
rs2147416	1.00[CEU][hapmap]
rs3758487	1.00[CEU][hapmap]
rs4145761	0.87[ASN][1000 genomes]
rs7077019	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7077534	1.00[CEU][hapmap]
rs7077956	1.00[CEU][hapmap]
rs7090604	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7098246	0.87[ASN][1000 genomes]
rs74147302	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74150103	1.00[EUR][1000 genomes]
rs74150104	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913997	0.94[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90629400-90633400	Weak transcription	Fetal Lung	lung
2	chr10:90630200-90639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:90632200-90633200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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