Variant report

Variant	rs74147302
Chromosome Location	chr10:90637278-90637279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90634887..90637855-chr10:90638729..90640945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138134	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11202877	0.90[ASN][1000 genomes]
rs11202880	0.89[ASN][1000 genomes]
rs11202881	0.88[ASN][1000 genomes]
rs12262249	0.89[ASN][1000 genomes]
rs12264141	0.89[ASN][1000 genomes]
rs12269097	0.89[ASN][1000 genomes]
rs1441742	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17113812	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1926184	0.90[ASN][1000 genomes]
rs1926185	0.90[ASN][1000 genomes]
rs1926186	0.90[ASN][1000 genomes]
rs55885377	0.90[ASN][1000 genomes]
rs57063754	0.90[ASN][1000 genomes]
rs57261011	0.91[ASN][1000 genomes]
rs7076879	0.88[ASN][1000 genomes]
rs74150104	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74150105	0.90[ASN][1000 genomes]
rs7899463	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7910708	0.88[ASN][1000 genomes]
rs7911566	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs952323	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90630200-90639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:90633800-90637400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:90634800-90638000	Weak transcription	NHLF	lung
4	chr10:90635000-90639200	Weak transcription	Fetal Heart	heart
5	chr10:90635000-90639400	Weak transcription	Ovary	ovary
6	chr10:90636400-90638200	Enhancers	Dnd41	blood
7	chr10:90636800-90639200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:90637200-90637600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:90637200-90637600	Enhancers	Fetal Thymus	thymus
10	chr10:90637200-90639200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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