Variant report

Variant	rs57261011
Chromosome Location	chr10:90624961-90624962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90594917..90596080-chr10:90624854..90626535,16	MCF-7	breast:
2	chr10:90624577..90627466-chr10:90633159..90635774,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11202877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202878	0.85[AMR][1000 genomes]
rs11202880	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11202881	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12248501	0.85[AMR][1000 genomes]
rs12262249	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12264141	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269097	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17113606	0.93[EUR][1000 genomes]
rs1887025	0.93[EUR][1000 genomes]
rs1926184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4145761	0.95[AFR][1000 genomes]
rs55885377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57063754	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076879	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098246	0.95[AFR][1000 genomes]
rs74147302	0.91[ASN][1000 genomes]
rs74150105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7910708	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs952323	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90621600-90625000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:90621600-90625000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:90621600-90625000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:90624800-90625000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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