Variant report

Variant	rs17113606
Chromosome Location	chr10:90609134-90609135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90599583..90601963-chr10:90608850..90611215,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10887867	0.80[CHB][hapmap]
rs11202877	0.93[EUR][1000 genomes]
rs11202880	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11202881	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11202890	0.80[CHB][hapmap]
rs11595119	0.93[CHB][hapmap]
rs12248284	0.80[CHB][hapmap]
rs12254084	0.85[CHB][hapmap]
rs12262249	0.93[EUR][1000 genomes]
rs12264141	0.93[EUR][1000 genomes]
rs12269097	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17114152	0.93[CHB][hapmap]
rs17114161	0.80[CHB][hapmap]
rs1887025	1.00[EUR][1000 genomes]
rs1926184	0.93[EUR][1000 genomes]
rs1926185	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1926186	0.93[EUR][1000 genomes]
rs2231779	1.00[YRI][hapmap]
rs4431933	0.80[CHB][hapmap]
rs55885377	0.93[EUR][1000 genomes]
rs57063754	0.93[EUR][1000 genomes]
rs57261011	0.93[EUR][1000 genomes]
rs7075596	1.00[CEU][hapmap]
rs7076879	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs74150105	0.93[EUR][1000 genomes]
rs755049	1.00[CEU][hapmap]
rs7910708	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90578600-90611200	Weak transcription	Esophagus	oesophagus
2	chr10:90606600-90611400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:90606600-90614200	Weak transcription	Gastric	stomach
4	chr10:90606800-90610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:90606800-90611400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:90606800-90613200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:90607000-90609600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:90607200-90610200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:90607600-90611200	Weak transcription	Fetal Intestine Large	intestine
10	chr10:90607600-90612600	Enhancers	Hela-S3	cervix
11	chr10:90608000-90609200	Enhancers	Stomach Mucosa	stomach
12	chr10:90608000-90614800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr10:90608200-90609200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:90608200-90609200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:90608200-90609200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:90608200-90609200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:90608200-90609200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:90608200-90609200	Enhancers	HSMM	muscle
19	chr10:90608200-90609400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:90608200-90609400	Enhancers	NH-A	brain
21	chr10:90608200-90609800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:90608200-90613400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr10:90608600-90609200	Weak transcription	Fetal Lung	lung
24	chr10:90608600-90609200	Weak transcription	Small Intestine	intestine
25	chr10:90608600-90609200	Enhancers	HSMMtube	muscle
26	chr10:90608600-90609400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:90608600-90609400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:90608600-90609800	Enhancers	NHDF-Ad	bronchial
29	chr10:90608600-90610000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr10:90608600-90611200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:90608600-90612400	Weak transcription	Adipose Nuclei	Adipose
32	chr10:90608600-90613000	Enhancers	HMEC	breast
33	chr10:90608800-90609200	Enhancers	GM12878-XiMat	blood
34	chr10:90608800-90609400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:90608800-90609400	Enhancers	NHLF	lung
36	chr10:90608800-90609800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:90608800-90611200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:90608800-90611600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:90608800-90612800	Enhancers	NHEK	skin
40	chr10:90609000-90609200	Enhancers	Duodenum Mucosa	Duodenum
41	chr10:90609000-90609200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr10:90609000-90609200	Flanking Active TSS	Osteobl	bone
43	chr10:90609000-90611200	Weak transcription	A549	lung
44	chr10:90609000-90611800	Active TSS	Primary B cells from cord blood	blood

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