Variant report

Variant	rs1887025
Chromosome Location	chr10:90620601-90620602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11202877	0.93[EUR][1000 genomes]
rs11202880	0.93[EUR][1000 genomes]
rs11202881	0.93[EUR][1000 genomes]
rs12262249	0.93[EUR][1000 genomes]
rs12264141	0.93[EUR][1000 genomes]
rs12269097	0.93[EUR][1000 genomes]
rs17113606	1.00[EUR][1000 genomes]
rs1926184	0.93[EUR][1000 genomes]
rs1926185	0.93[EUR][1000 genomes]
rs1926186	0.93[EUR][1000 genomes]
rs55885377	0.93[EUR][1000 genomes]
rs57063754	0.93[EUR][1000 genomes]
rs57261011	0.93[EUR][1000 genomes]
rs7076879	0.93[EUR][1000 genomes]
rs74150105	0.93[EUR][1000 genomes]
rs7910708	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90614600-90620800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:90617400-90621600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:90618600-90621200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:90620000-90621600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr10:90620200-90621600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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