Variant report

Variant	rs35999277
Chromosome Location	chr16:71873275-71873276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71872898..71875462-chr16:71878200..71881157,2	K562	blood:
2	chr16:71866917..71869031-chr16:71872572..71874143,2	MCF-7	breast:
3	chr16:71840817..71843211-chr16:71871450..71874484,3	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction
ENSG00000262140	Chromatin interaction
ENSG00000182149	Chromatin interaction
ENSG00000224470	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11075909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11859593	1.00[EUR][1000 genomes]
rs11861316	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11865439	1.00[EUR][1000 genomes]
rs11867138	1.00[EUR][1000 genomes]
rs13330881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421940	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28431030	0.80[AFR][1000 genomes]
rs28450346	0.80[AFR][1000 genomes]
rs28560350	1.00[AMR][1000 genomes]
rs28602614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654218	1.00[AMR][1000 genomes]
rs6499544	0.80[AFR][1000 genomes]
rs6499549	0.80[AFR][1000 genomes]
rs7187418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7193401	1.00[EUR][1000 genomes]
rs7198387	0.80[AFR][1000 genomes]
rs73574480	1.00[AMR][1000 genomes]
rs73578401	0.87[AMR][1000 genomes]
rs73586193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588120	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73588121	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8045275	0.80[AFR][1000 genomes]
rs8050993	1.00[EUR][1000 genomes]
rs8051202	1.00[AMR][1000 genomes]
rs8051875	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9928364	1.00[AMR][1000 genomes]
rs9928365	0.80[AFR][1000 genomes]
rs9938542	1.00[AMR][1000 genomes]
rs9939404	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71868600-71876400	Weak transcription	Fetal Kidney	kidney
2	chr16:71870000-71874000	Weak transcription	HepG2	liver
3	chr16:71870800-71879000	Weak transcription	NHEK	skin
4	chr16:71871400-71876200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:71871400-71879000	Weak transcription	HMEC	breast
6	chr16:71871600-71879200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr16:71871800-71876200	Weak transcription	K562	blood

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