Variant report

Variant	rs28431030
Chromosome Location	chr16:71869009-71869010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13334617	0.95[AFR][1000 genomes]
rs13335391	0.98[AFR][1000 genomes]
rs28450346	1.00[AFR][1000 genomes]
rs28523974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35999277	0.80[AFR][1000 genomes]
rs59358880	0.97[AFR][1000 genomes]
rs6499544	1.00[AFR][1000 genomes]
rs6499549	1.00[AFR][1000 genomes]
rs7198387	1.00[AFR][1000 genomes]
rs73590035	0.92[AFR][1000 genomes]
rs73590039	0.89[AFR][1000 genomes]
rs73590051	0.89[AFR][1000 genomes]
rs74027713	0.92[AFR][1000 genomes]
rs8045275	1.00[AFR][1000 genomes]
rs8051461	0.95[AFR][1000 genomes]
rs9673858	0.89[AFR][1000 genomes]
rs9921383	0.93[AFR][1000 genomes]
rs9923213	0.80[AFR][1000 genomes]
rs9928365	1.00[AFR][1000 genomes]
rs9937049	0.98[AFR][1000 genomes]
rs9937974	0.98[AFR][1000 genomes]
rs9941356	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71868600-71876400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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