Variant report

Variant	rs9941356
Chromosome Location	chr16:71848619-71848620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71842099..71845312-chr16:71845371..71851524,8	K562	blood:
2	chr16:71847353..71849880-chr16:71853072..71855463,2	MCF-7	breast:
3	chr16:71815919..71817496-chr16:71847689..71850509,2	MCF-7	breast:
4	chr16:71843164..71845312-chr16:71848079..71849658,2	K562	blood:
5	chr16:71843781..71846275-chr16:71846671..71848938,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13334617	1.00[AMR][1000 genomes]
rs13335391	1.00[AMR][1000 genomes]
rs13337119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431030	0.80[AFR][1000 genomes]
rs28450081	1.00[AMR][1000 genomes]
rs28450346	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59358880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59880935	0.93[AFR][1000 genomes]
rs6499544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499549	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7186536	1.00[AMR][1000 genomes]
rs7191105	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198387	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7202000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578375	1.00[AMR][1000 genomes]
rs73582271	1.00[AMR][1000 genomes]
rs73582274	1.00[AMR][1000 genomes]
rs73582278	1.00[AMR][1000 genomes]
rs73582282	1.00[AMR][1000 genomes]
rs73582529	1.00[AMR][1000 genomes]
rs73584107	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590035	1.00[AMR][1000 genomes]
rs73590051	1.00[AMR][1000 genomes]
rs74027713	1.00[AMR][1000 genomes]
rs8045275	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8048947	1.00[AMR][1000 genomes]
rs8051461	1.00[AMR][1000 genomes]
rs9673858	1.00[AMR][1000 genomes]
rs9921383	1.00[AMR][1000 genomes]
rs9923154	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925225	1.00[AMR][1000 genomes]
rs9928365	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932715	1.00[AMR][1000 genomes]
rs9932742	1.00[AMR][1000 genomes]
rs9933862	1.00[AMR][1000 genomes]
rs9937049	1.00[AMR][1000 genomes]
rs9937974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843600-71852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71843800-71850000	Weak transcription	Osteobl	bone
3	chr16:71843800-71850400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:71843800-71850400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:71843800-71850400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr16:71843800-71850400	Weak transcription	Fetal Stomach	stomach
7	chr16:71843800-71850600	Weak transcription	Brain Hippocampus Middle	brain
8	chr16:71843800-71850600	Weak transcription	A549	lung
9	chr16:71843800-71850800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr16:71843800-71850800	Weak transcription	HSMM	muscle
11	chr16:71843800-71851600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:71843800-71851600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr16:71843800-71855400	Weak transcription	Primary T cells from cord blood	blood
14	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:71844000-71850400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr16:71844000-71859400	Weak transcription	Fetal Intestine Small	intestine
17	chr16:71844200-71849600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:71844200-71850400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr16:71844200-71850400	Weak transcription	Hela-S3	cervix
20	chr16:71844200-71850600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr16:71844200-71850600	Weak transcription	Brain Angular Gyrus	brain
22	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr16:71844400-71850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr16:71845200-71851800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr16:71845400-71849600	Weak transcription	GM12878-XiMat	blood
27	chr16:71845400-71850600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:71845600-71848800	Weak transcription	HepG2	liver
29	chr16:71845600-71850600	Weak transcription	K562	blood
30	chr16:71845600-71851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr16:71846200-71850400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:71846200-71850600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr16:71846600-71851600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr16:71848600-71852200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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