Variant report

Variant	rs7191105
Chromosome Location	chr16:71823444-71823445
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71823251..71826852-chr16:71839928..71843333,4	K562	blood:
2	chr16:71821888..71825986-chr16:71827605..71831800,6	MCF-7	breast:
3	chr16:71820044..71826852-chr16:71835906..71843775,16	K562	blood:
4	chr16:71823070..71825455-chr16:71841320..71842934,2	MCF-7	breast:
5	chr16:71822504..71826095-chr16:71827196..71830655,3	K562	blood:
6	chr16:71821041..71823920-chr16:71838306..71840822,3	MCF-7	breast:
7	chr16:71823170..71824685-chr16:71836781..71838672,2	K562	blood:
8	chr16:71818651..71820416-chr16:71822467..71824853,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11075896	0.82[YRI][hapmap]
rs11075897	0.81[YRI][hapmap]
rs13334255	0.82[YRI][hapmap]
rs13334617	1.00[AMR][1000 genomes]
rs13335391	1.00[AMR][1000 genomes]
rs13337119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28436203	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs28450081	1.00[AMR][1000 genomes]
rs28450346	1.00[AMR][1000 genomes]
rs28487278	0.83[AFR][1000 genomes]
rs28711364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28757746	0.83[AFR][1000 genomes]
rs34113755	0.85[AFR][1000 genomes]
rs59358880	1.00[AMR][1000 genomes]
rs6499544	1.00[AMR][1000 genomes]
rs6499549	1.00[AMR][1000 genomes]
rs7186536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198387	1.00[AMR][1000 genomes]
rs7198645	0.82[YRI][hapmap]
rs7202000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578375	1.00[AMR][1000 genomes]
rs73582271	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582274	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582278	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582282	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582529	1.00[AMR][1000 genomes]
rs73584107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590035	1.00[AMR][1000 genomes]
rs73590051	1.00[AMR][1000 genomes]
rs74027713	1.00[AMR][1000 genomes]
rs8045275	1.00[AMR][1000 genomes]
rs8045394	0.82[YRI][hapmap]
rs8048947	1.00[AMR][1000 genomes]
rs8051461	1.00[AMR][1000 genomes]
rs8059131	0.82[YRI][hapmap];0.90[AFR][1000 genomes]
rs9302628	0.82[YRI][hapmap]
rs9673858	1.00[AMR][1000 genomes]
rs9921383	1.00[AMR][1000 genomes]
rs9923154	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923213	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925225	1.00[AMR][1000 genomes]
rs9925712	0.83[AFR][1000 genomes]
rs9928298	0.81[YRI][hapmap]
rs9928365	1.00[AMR][1000 genomes]
rs9930271	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs9930588	0.84[YRI][hapmap]
rs9932715	1.00[AMR][1000 genomes]
rs9932742	1.00[AMR][1000 genomes]
rs9933862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9937049	1.00[AMR][1000 genomes]
rs9937974	1.00[AMR][1000 genomes]
rs9941356	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71793200-71830400	Weak transcription	Fetal Heart	heart
3	chr16:71797000-71823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:71803000-71823800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr16:71808000-71829800	Weak transcription	NHLF	lung
6	chr16:71808400-71828800	Weak transcription	HSMMtube	muscle
7	chr16:71811800-71826600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:71812600-71825800	Weak transcription	Right Atrium	heart
9	chr16:71815400-71823800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr16:71816000-71840400	Weak transcription	Fetal Kidney	kidney
11	chr16:71818000-71823600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr16:71818000-71823600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr16:71818200-71823600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:71818200-71823600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr16:71818200-71823600	Strong transcription	Fetal Muscle Leg	muscle
16	chr16:71818200-71823600	Strong transcription	HepG2	liver
17	chr16:71819000-71823600	Strong transcription	Fetal Intestine Large	intestine
18	chr16:71819200-71823600	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr16:71819800-71823600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr16:71819800-71823600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr16:71819800-71823800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr16:71819800-71823800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr16:71819800-71824400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:71820200-71823600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr16:71820200-71823600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr16:71820200-71823600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:71820400-71823600	Strong transcription	Placenta Amnion	Placenta Amnion
28	chr16:71820400-71823800	Strong transcription	Osteobl	bone
29	chr16:71820600-71823600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr16:71820600-71823600	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr16:71820800-71824000	Strong transcription	Dnd41	blood
32	chr16:71821000-71824000	Strong transcription	GM12878-XiMat	blood
33	chr16:71821200-71823600	Strong transcription	A549	lung
34	chr16:71821400-71823600	Strong transcription	Hela-S3	cervix
35	chr16:71821400-71824800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:71821400-71826200	Weak transcription	Fetal Intestine Small	intestine
37	chr16:71821400-71840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr16:71822000-71823600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr16:71822200-71823600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr16:71822200-71823600	Strong transcription	NHEK	skin
41	chr16:71822800-71823600	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr16:71822800-71823800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr16:71823200-71823600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr16:71823200-71824800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr16:71823200-71824800	Weak transcription	Brain Hippocampus Middle	brain
46	chr16:71823200-71825400	Weak transcription	Primary T cells from cord blood	blood
47	chr16:71823200-71826000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr16:71823200-71826200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr16:71823200-71829000	Weak transcription	Colon Smooth Muscle	Colon
50	chr16:71823200-71829800	Weak transcription	Psoas Muscle	Psoas

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