Variant report

Variant	rs28711364
Chromosome Location	chr16:71831532-71831533
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71821888..71825986-chr16:71827605..71831800,6	MCF-7	breast:
2	chr16:71819159..71821764-chr16:71828955..71831636,2	K562	blood:
3	chr16:71828819..71831734-chr16:71916016..71919013,3	MCF-7	breast:
4	chr16:71828963..71831698-chr16:71869677..71872255,2	MCF-7	breast:
5	chr16:71829817..71832917-chr16:71838468..71842118,4	K562	blood:
6	chr16:71809920..71813337-chr16:71827529..71832113,4	K562	blood:
7	chr16:71826988..71830438-chr16:71831436..71833598,3	K562	blood:
8	chr16:71831282..71834654-chr16:71840292..71844031,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000102984	Chromatin interaction
ENSG00000166747	Chromatin interaction
ENSG00000261765	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13334617	1.00[AMR][1000 genomes]
rs13335391	1.00[AMR][1000 genomes]
rs13337119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28436203	0.83[AFR][1000 genomes]
rs28450081	1.00[AMR][1000 genomes]
rs28450346	1.00[AMR][1000 genomes]
rs59358880	1.00[AMR][1000 genomes]
rs59880935	0.86[AFR][1000 genomes]
rs6499544	1.00[AMR][1000 genomes]
rs6499549	1.00[AMR][1000 genomes]
rs7186536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7191105	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198387	1.00[AMR][1000 genomes]
rs7202000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578375	1.00[AMR][1000 genomes]
rs73582271	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582278	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582282	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582529	1.00[AMR][1000 genomes]
rs73584107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590035	1.00[AMR][1000 genomes]
rs73590051	1.00[AMR][1000 genomes]
rs74027713	1.00[AMR][1000 genomes]
rs8045275	1.00[AMR][1000 genomes]
rs8048947	1.00[AMR][1000 genomes]
rs8051461	1.00[AMR][1000 genomes]
rs8059131	0.84[AFR][1000 genomes]
rs9673858	1.00[AMR][1000 genomes]
rs9921383	1.00[AMR][1000 genomes]
rs9923154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923213	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925225	1.00[AMR][1000 genomes]
rs9928365	1.00[AMR][1000 genomes]
rs9930271	0.81[AFR][1000 genomes]
rs9932715	1.00[AMR][1000 genomes]
rs9932742	1.00[AMR][1000 genomes]
rs9933862	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9937049	1.00[AMR][1000 genomes]
rs9937974	1.00[AMR][1000 genomes]
rs9941356	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71816000-71840400	Weak transcription	Fetal Kidney	kidney
3	chr16:71821400-71840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:71823200-71832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:71823200-71835200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:71823200-71840400	Weak transcription	HUVEC	blood vessel
7	chr16:71823200-71841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:71823400-71831600	Weak transcription	Fetal Brain Female	brain
9	chr16:71823400-71832000	Weak transcription	Gastric	stomach
10	chr16:71823400-71833000	Weak transcription	HMEC	breast
11	chr16:71823400-71833200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr16:71823400-71834800	Weak transcription	Small Intestine	intestine
13	chr16:71823400-71836000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr16:71823400-71836800	Weak transcription	Brain Germinal Matrix	brain
15	chr16:71823400-71837400	Weak transcription	HSMM	muscle
16	chr16:71823400-71838600	Weak transcription	Brain Substantia Nigra	brain
17	chr16:71823400-71839800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr16:71823400-71840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr16:71823400-71840000	Weak transcription	Brain Angular Gyrus	brain
20	chr16:71823400-71840000	Weak transcription	Brain Anterior Caudate	brain
21	chr16:71823400-71840000	Weak transcription	K562	blood
22	chr16:71823400-71840200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr16:71823400-71840200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr16:71823400-71840400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr16:71823400-71840400	Weak transcription	Fetal Brain Male	brain
26	chr16:71823400-71840400	Weak transcription	NH-A	brain
27	chr16:71823400-71841000	Weak transcription	Colonic Mucosa	Colon
28	chr16:71823400-71841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr16:71823400-71841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr16:71823400-71841400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr16:71823400-71841600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr16:71823400-71841600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr16:71823400-71841600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr16:71823400-71841600	Weak transcription	Aorta	Aorta
35	chr16:71823400-71841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr16:71823400-71841800	Weak transcription	Esophagus	oesophagus
37	chr16:71823400-71841800	Weak transcription	Pancreas	Pancrea
38	chr16:71823600-71838800	Weak transcription	Hela-S3	cervix
39	chr16:71823600-71839600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr16:71823600-71840000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr16:71823600-71840400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr16:71823800-71837600	Weak transcription	Osteobl	bone
43	chr16:71823800-71840800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr16:71825600-71832000	Weak transcription	Adipose Nuclei	Adipose
45	chr16:71825600-71839600	Weak transcription	Brain Hippocampus Middle	brain
46	chr16:71826400-71832000	Weak transcription	Primary B cells from cord blood	blood
47	chr16:71826400-71839600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr16:71826400-71840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr16:71826600-71832000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr16:71826600-71840400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links