Variant report

Variant	rs59880935
Chromosome Location	chr16:71852572-71852573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13337119	0.83[AFR][1000 genomes]
rs28711364	0.86[AFR][1000 genomes]
rs7202000	0.86[AFR][1000 genomes]
rs73584107	0.83[AFR][1000 genomes]
rs9923154	0.88[AFR][1000 genomes]
rs9923213	0.93[AFR][1000 genomes]
rs9941356	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843600-71852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71843800-71855400	Weak transcription	Primary T cells from cord blood	blood
3	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:71844000-71859400	Weak transcription	Fetal Intestine Small	intestine
5	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr16:71851000-71855000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:71851000-71859600	Weak transcription	K562	blood
9	chr16:71851000-71860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:71851200-71862200	Weak transcription	Fetal Stomach	stomach
11	chr16:71851200-71866400	Weak transcription	HSMMtube	muscle
12	chr16:71851600-71853800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:71852000-71852600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr16:71852200-71852600	Active TSS	Primary B cells from peripheral blood	blood
15	chr16:71852200-71852600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr16:71852200-71852600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr16:71852200-71852800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr16:71852200-71852800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr16:71852200-71853000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr16:71852200-71853000	Active TSS	GM12878-XiMat	blood
21	chr16:71852200-71854000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr16:71852200-71855200	Weak transcription	Colon Smooth Muscle	Colon
23	chr16:71852200-71859000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:71852200-71861600	Weak transcription	Esophagus	oesophagus
25	chr16:71852200-71861800	Weak transcription	Fetal Muscle Leg	muscle
26	chr16:71852200-71861800	Weak transcription	HSMM	muscle
27	chr16:71852200-71866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr16:71852400-71852600	Enhancers	Fetal Muscle Trunk	muscle
29	chr16:71852400-71852600	Enhancers	Stomach Smooth Muscle	stomach
30	chr16:71852400-71852800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr16:71852400-71852800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr16:71852400-71852800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr16:71852400-71852800	Enhancers	Osteobl	bone
34	chr16:71852400-71863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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