Variant report

Variant	rs73582282
Chromosome Location	chr16:71817212-71817213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71815919..71817496-chr16:71847689..71850509,2	MCF-7	breast:
2	chr16:71815403..71819721-chr16:71837408..71844213,7	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs13334187	0.83[AFR][1000 genomes]
rs13334255	0.83[AFR][1000 genomes]
rs13334566	0.83[AFR][1000 genomes]
rs13334617	1.00[AMR][1000 genomes]
rs13335391	1.00[AMR][1000 genomes]
rs13337119	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337224	0.83[AFR][1000 genomes]
rs28436203	0.95[AFR][1000 genomes]
rs28450081	1.00[AMR][1000 genomes]
rs28450346	1.00[AMR][1000 genomes]
rs28487278	0.90[AFR][1000 genomes]
rs28711364	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28757746	0.90[AFR][1000 genomes]
rs34113755	0.91[AFR][1000 genomes]
rs57187537	0.83[AFR][1000 genomes]
rs59358880	1.00[AMR][1000 genomes]
rs6499544	1.00[AMR][1000 genomes]
rs6499549	1.00[AMR][1000 genomes]
rs7186536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7191105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198387	1.00[AMR][1000 genomes]
rs7198645	0.83[AFR][1000 genomes]
rs7202000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578375	1.00[AMR][1000 genomes]
rs73580232	0.83[AFR][1000 genomes]
rs73582208	0.83[AFR][1000 genomes]
rs73582231	0.86[AFR][1000 genomes]
rs73582271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582529	1.00[AMR][1000 genomes]
rs73584107	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590035	1.00[AMR][1000 genomes]
rs73590051	1.00[AMR][1000 genomes]
rs74027713	1.00[AMR][1000 genomes]
rs8045275	1.00[AMR][1000 genomes]
rs8048947	1.00[AMR][1000 genomes]
rs8051461	1.00[AMR][1000 genomes]
rs8059131	0.96[AFR][1000 genomes]
rs8063658	0.86[AFR][1000 genomes]
rs9673858	1.00[AMR][1000 genomes]
rs9921383	1.00[AMR][1000 genomes]
rs9923154	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923213	1.00[AMR][1000 genomes]
rs9924829	0.83[AFR][1000 genomes]
rs9925225	1.00[AMR][1000 genomes]
rs9925712	0.90[AFR][1000 genomes]
rs9927004	0.81[AFR][1000 genomes]
rs9928365	1.00[AMR][1000 genomes]
rs9930271	0.93[AFR][1000 genomes]
rs9932715	1.00[AMR][1000 genomes]
rs9932742	1.00[AMR][1000 genomes]
rs9933587	0.86[AFR][1000 genomes]
rs9933862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9935867	0.81[AFR][1000 genomes]
rs9937049	1.00[AMR][1000 genomes]
rs9937974	1.00[AMR][1000 genomes]
rs9941356	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71780000-71821400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr16:71783800-71820600	Weak transcription	Psoas Muscle	Psoas
4	chr16:71793200-71830400	Weak transcription	Fetal Heart	heart
5	chr16:71797000-71823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:71798400-71822200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr16:71802000-71821400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr16:71803000-71823800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr16:71805000-71823000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr16:71805200-71821200	Weak transcription	K562	blood
11	chr16:71805400-71817400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr16:71807400-71821400	Weak transcription	Hela-S3	cervix
13	chr16:71807600-71817400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr16:71807600-71821200	Weak transcription	Fetal Brain Male	brain
15	chr16:71807800-71822600	Weak transcription	Aorta	Aorta
16	chr16:71808000-71820200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:71808000-71829800	Weak transcription	NHLF	lung
18	chr16:71808200-71820200	Weak transcription	Right Ventricle	heart
19	chr16:71808200-71821200	Weak transcription	Colonic Mucosa	Colon
20	chr16:71808400-71828800	Weak transcription	HSMMtube	muscle
21	chr16:71808600-71820600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr16:71808600-71821000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr16:71808800-71821000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr16:71810400-71820600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr16:71810600-71821400	Weak transcription	HUVEC	blood vessel
26	chr16:71811800-71818000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr16:71811800-71820400	Weak transcription	Small Intestine	intestine
28	chr16:71811800-71820600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr16:71811800-71820600	Weak transcription	Ovary	ovary
30	chr16:71811800-71822400	Weak transcription	Gastric	stomach
31	chr16:71811800-71822600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr16:71811800-71826600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:71812000-71820000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr16:71812000-71820600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr16:71812000-71820600	Weak transcription	Brain Germinal Matrix	brain
36	chr16:71812000-71820600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr16:71812000-71820800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr16:71812000-71820800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr16:71812000-71821400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr16:71812000-71822000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr16:71812000-71822600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr16:71812000-71822800	Weak transcription	Spleen	Spleen
43	chr16:71812000-71823000	Weak transcription	Pancreas	Pancrea
44	chr16:71812200-71820600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr16:71812200-71822200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr16:71812400-71818000	Weak transcription	Fetal Thymus	thymus
47	chr16:71812400-71818200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr16:71812400-71820200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr16:71812400-71820600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr16:71812400-71820800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links