Variant report

Variant	rs360139
Chromosome Location	chr11:9775091-9775092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9774053..9775652-chr11:9775984..9777697,2	MCF-7	breast:
2	chr11:9773431..9776316-chr11:9777677..9779608,2	K562	blood:
3	chr11:9773431..9775372-chr11:9777677..9779638,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10743117	0.84[ASN][1000 genomes]
rs10743118	0.85[ASN][1000 genomes]
rs10770059	0.82[EUR][1000 genomes]
rs10840294	0.80[ASN][1000 genomes]
rs10840295	0.84[ASN][1000 genomes]
rs10840296	0.87[ASN][1000 genomes]
rs173396	0.86[ASN][1000 genomes]
rs2649044	0.80[ASN][1000 genomes]
rs360136	0.93[ASN][1000 genomes]
rs360137	0.93[ASN][1000 genomes]
rs360153	0.89[ASN][1000 genomes]
rs360156	0.89[ASN][1000 genomes]
rs360157	0.86[ASN][1000 genomes]
rs373894	0.87[ASN][1000 genomes]
rs378825	0.89[ASN][1000 genomes]
rs415895	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472109	0.92[ASN][1000 genomes]
rs4910498	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4910499	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs491205	0.87[ASN][1000 genomes]
rs93138	0.86[ASN][1000 genomes]
rs93139	0.89[ASN][1000 genomes]
rs9943599	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9742200-9779400	Weak transcription	Fetal Brain Male	brain
2	chr11:9745000-9775600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:9755000-9777600	Weak transcription	Colonic Mucosa	Colon
4	chr11:9758800-9776000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:9761000-9777200	Weak transcription	Fetal Kidney	kidney
6	chr11:9762400-9777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:9762400-9777400	Weak transcription	Esophagus	oesophagus
8	chr11:9762400-9777400	Weak transcription	Right Ventricle	heart
9	chr11:9762400-9779400	Weak transcription	Liver	Liver
10	chr11:9762400-9779400	Weak transcription	Psoas Muscle	Psoas
11	chr11:9762600-9779200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:9762800-9779400	Weak transcription	Fetal Brain Female	brain
13	chr11:9763200-9775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:9763600-9779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:9770200-9775400	Weak transcription	Right Atrium	heart
16	chr11:9770200-9775800	Weak transcription	Brain Angular Gyrus	brain
17	chr11:9770200-9776400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:9770200-9777000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:9770200-9777000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:9770200-9777600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:9770200-9777600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:9770200-9779200	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:9770200-9779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:9770200-9779400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:9770200-9779400	Weak transcription	Ovary	ovary
26	chr11:9770200-9779400	Weak transcription	Pancreas	Pancrea
27	chr11:9770200-9779600	Weak transcription	Small Intestine	intestine
28	chr11:9770400-9775200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:9770400-9775400	Weak transcription	Brain Anterior Caudate	brain
30	chr11:9770400-9775800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:9770400-9776600	Weak transcription	Fetal Thymus	thymus
32	chr11:9770400-9777000	Weak transcription	Fetal Lung	lung
33	chr11:9770400-9779200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:9770400-9779400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:9770600-9777400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:9770800-9775800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:9771800-9775200	Weak transcription	Hela-S3	cervix
38	chr11:9772400-9775800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:9772400-9777000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:9772400-9777200	Weak transcription	Fetal Stomach	stomach
41	chr11:9772400-9777200	Weak transcription	Spleen	Spleen
42	chr11:9772400-9779200	Weak transcription	Primary T cells from cord blood	blood
43	chr11:9772400-9779400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:9772400-9779400	Weak transcription	Gastric	stomach
45	chr11:9772600-9775600	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:9772600-9777000	Weak transcription	Left Ventricle	heart
47	chr11:9772600-9777200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:9772600-9777200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:9772800-9775400	Weak transcription	Brain Substantia Nigra	brain
50	chr11:9772800-9776800	Weak transcription	Primary hematopoietic stem cells	blood

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