Variant report

Variant	rs36026965
Chromosome Location	chr6:140287386-140287387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694229..139697211-chr6:140287272..140289498,2	MCF-7	breast:
2	chr6:140282684..140285359-chr6:140286233..140287873,2	K562	blood:
3	chr6:140285910..140289430-chr6:140290980..140294749,5	K562	blood:
4	chr6:139695190..139698861-chr6:140285934..140289536,4	K562	blood:
5	chr6:140283635..140285359-chr6:140286373..140288946,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1028471	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12523886	0.86[ASN][1000 genomes]
rs12528420	0.86[ASN][1000 genomes]
rs12529701	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529920	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1572674	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069706	0.86[ASN][1000 genomes]
rs17069710	0.86[ASN][1000 genomes]
rs17069727	0.86[ASN][1000 genomes]
rs62429482	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62429486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429513	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429521	0.89[ASN][1000 genomes]
rs62429525	0.84[EUR][1000 genomes]
rs73571530	0.86[ASN][1000 genomes]
rs7770431	0.86[ASN][1000 genomes]
rs9484329	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484331	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140282200-140288800	Weak transcription	NHDF-Ad	bronchial
2	chr6:140284400-140292200	Weak transcription	Placenta	Placenta
3	chr6:140284600-140287600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:140284600-140288400	Weak transcription	Adipose Nuclei	Adipose
5	chr6:140285600-140288200	Enhancers	Fetal Heart	heart
6	chr6:140285800-140287600	Enhancers	Liver	Liver
7	chr6:140285800-140287600	Enhancers	Fetal Kidney	kidney
8	chr6:140285800-140287600	Enhancers	Rectal Smooth Muscle	rectum
9	chr6:140285800-140287800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:140285800-140288000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:140285800-140288200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:140286000-140287400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:140286000-140287400	Enhancers	NHLF	lung
14	chr6:140286000-140287800	Enhancers	Colon Smooth Muscle	Colon
15	chr6:140286000-140288000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:140286000-140289200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:140286200-140287600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:140286200-140287800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:140286200-140287800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:140286400-140290000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:140286600-140287600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:140286800-140287600	Enhancers	Fetal Lung	lung
23	chr6:140286800-140291400	Weak transcription	NH-A	brain
24	chr6:140287000-140288200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:140287000-140292600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:140287200-140288200	Weak transcription	Osteobl	bone

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