Variant report

Variant	rs62429525
Chromosome Location	chr6:140367347-140367348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140363202..140365064-chr6:140365355..140367836,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1028471	0.85[EUR][1000 genomes]
rs10499215	1.00[AFR][1000 genomes]
rs10499216	0.98[ASN][1000 genomes]
rs10499219	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523886	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12528420	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12529701	0.82[ASN][1000 genomes]
rs1390500	0.80[EUR][1000 genomes]
rs1572674	0.85[EUR][1000 genomes]
rs1580734	0.87[EUR][1000 genomes]
rs17069706	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069710	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069727	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069741	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050716	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36026965	0.84[EUR][1000 genomes]
rs60747543	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62429482	0.81[EUR][1000 genomes]
rs62429486	0.84[EUR][1000 genomes]
rs62429513	0.85[EUR][1000 genomes]
rs62429521	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62431062	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62431064	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62431065	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62431066	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62431068	1.00[AFR][1000 genomes]
rs6915764	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73571530	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7770431	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9484329	0.83[EUR][1000 genomes]
rs9484331	0.82[EUR][1000 genomes]
rs9484332	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3395457	chr6:140364559-140368757	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:140364400-140367600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:140365600-140373000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:140365600-140374200	Weak transcription	A549	lung
6	chr6:140365800-140371200	Weak transcription	Osteobl	bone
7	chr6:140366200-140368200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:140366400-140368000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:140366400-140370600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:140366600-140367400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:140366600-140371200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:140366600-140371200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:140366600-140372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:140366800-140369400	Weak transcription	Hela-S3	cervix
15	chr6:140366800-140370200	Weak transcription	Fetal Heart	heart
16	chr6:140366800-140370600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:140366800-140370600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:140366800-140370800	Weak transcription	NH-A	brain
19	chr6:140366800-140371400	Weak transcription	HMEC	breast
20	chr6:140366800-140371400	Weak transcription	NHLF	lung
21	chr6:140366800-140371600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:140366800-140371600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:140366800-140372200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:140367000-140367400	Weak transcription	NHEK	skin
25	chr6:140367000-140371400	Weak transcription	HSMM	muscle
26	chr6:140367200-140367600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:140367200-140371400	Weak transcription	NHDF-Ad	bronchial

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