Variant report

Variant	rs62431066
Chromosome Location	chr6:140421613-140421614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10499216	0.85[ASN][1000 genomes]
rs10499219	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1113096	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11966793	0.82[EUR][1000 genomes]
rs11967431	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11969633	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12523886	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12525793	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12526277	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12528420	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12529701	0.84[EUR][1000 genomes]
rs12529920	0.84[EUR][1000 genomes]
rs1390500	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1496114	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17069706	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17069710	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17069727	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17069741	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17069805	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17069893	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1879097	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2050716	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2328026	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57789174	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59447713	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60747543	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62429521	0.96[EUR][1000 genomes]
rs62429525	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62431062	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62431064	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62431065	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62431098	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431099	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431110	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431142	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6915764	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs732015	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73571530	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7770431	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140417400-140427000	Weak transcription	Gastric	stomach
2	chr6:140418400-140426400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:140419000-140427000	Weak transcription	Right Atrium	heart
4	chr6:140420000-140422400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:140420400-140426600	Weak transcription	Aorta	Aorta

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