Variant report

Variant	rs11967431
Chromosome Location	chr6:140498527-140498528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10499219	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1113096	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965946	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966793	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11969633	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523886	0.86[EUR][1000 genomes]
rs12524727	0.82[EUR][1000 genomes]
rs12525793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526277	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528420	0.86[EUR][1000 genomes]
rs12529188	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12529620	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529701	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12529729	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1390500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580734	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069706	0.86[EUR][1000 genomes]
rs17069710	0.86[EUR][1000 genomes]
rs17069727	0.85[EUR][1000 genomes]
rs17069741	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17069805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069893	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17069935	0.82[ASN][1000 genomes]
rs1879097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050716	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2328026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328060	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57789174	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59447713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60747543	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62429521	0.86[EUR][1000 genomes]
rs62429779	0.82[ASN][1000 genomes]
rs62429786	0.82[ASN][1000 genomes]
rs62429787	0.82[ASN][1000 genomes]
rs62429788	0.82[ASN][1000 genomes]
rs62429789	0.82[ASN][1000 genomes]
rs62431062	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431064	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431065	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431066	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62431098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62431099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62431110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62431142	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914407	0.82[ASN][1000 genomes]
rs6915764	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs732015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73571530	0.86[EUR][1000 genomes]
rs7770431	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140495600-140499200	Weak transcription	NHLF	lung
2	chr6:140495600-140499800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:140495800-140499400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:140496000-140499200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:140496200-140501200	Weak transcription	Placenta	Placenta
6	chr6:140496800-140499200	Weak transcription	Osteobl	bone
7	chr6:140497000-140498600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140497000-140499000	Weak transcription	NHDF-Ad	bronchial
9	chr6:140497000-140500000	Weak transcription	HMEC	breast
10	chr6:140497000-140516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:140497200-140499200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:140497200-140499200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:140497400-140499200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:140498200-140504400	Weak transcription	K562	blood

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