Variant report

Variant	rs11965946
Chromosome Location	chr6:140681277-140681278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1113096	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11966793	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11967431	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11969633	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12524727	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12525793	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12526277	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12529188	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529620	0.82[ASN][1000 genomes]
rs12529729	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1390500	0.82[ASN][1000 genomes]
rs1496114	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1580734	0.82[ASN][1000 genomes]
rs17069805	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17069893	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069935	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069970	0.91[ASN][1000 genomes]
rs1879097	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2328026	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2328060	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57789174	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59447713	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62429779	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429786	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62429787	0.97[ASN][1000 genomes]
rs62429788	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62429789	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62429831	0.85[ASN][1000 genomes]
rs62431098	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62431099	0.80[EUR][1000 genomes]
rs62431110	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62431142	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6914407	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs732015	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140675200-140683000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:140679000-140683400	Weak transcription	Placenta	Placenta
3	chr6:140680400-140682200	Enhancers	Colon Smooth Muscle	Colon
4	chr6:140680600-140682200	Enhancers	Brain Germinal Matrix	brain
5	chr6:140681200-140682000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:140681200-140682200	Enhancers	Fetal Heart	heart

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