Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1113096	0.84[ASN][1000 genomes]
rs11965946	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11966793	0.84[ASN][1000 genomes]
rs11967431	0.82[ASN][1000 genomes]
rs12524727	0.94[ASN][1000 genomes]
rs12525793	0.82[ASN][1000 genomes]
rs12526277	0.81[ASN][1000 genomes]
rs12529188	0.97[ASN][1000 genomes]
rs12529729	0.90[ASN][1000 genomes]
rs1496114	0.82[ASN][1000 genomes]
rs1580734	0.82[ASN][1000 genomes]
rs17069893	0.84[ASN][1000 genomes]
rs17069935	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17069970	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328060	0.95[ASN][1000 genomes]
rs57789174	0.82[ASN][1000 genomes]
rs59447713	0.82[ASN][1000 genomes]
rs62429779	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62429786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429787	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429788	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429831	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62431110	0.82[ASN][1000 genomes]
rs62431142	0.85[ASN][1000 genomes]
rs732015	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140729000-140754000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140732000-140732400	Active TSS	Liver	Liver

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