Variant report

Variant	rs62429831
Chromosome Location	chr6:140809186-140809187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140807152..140810053-chr6:140862553..140864206,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11965946	0.85[ASN][1000 genomes]
rs12524727	0.83[ASN][1000 genomes]
rs12529188	0.85[ASN][1000 genomes]
rs17069935	0.85[ASN][1000 genomes]
rs17069970	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328060	0.84[ASN][1000 genomes]
rs62429779	0.85[ASN][1000 genomes]
rs62429786	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62429787	0.88[ASN][1000 genomes]
rs62429788	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62429789	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62429830	0.83[AFR][1000 genomes]
rs62429833	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914407	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604769	chr6:140785977-140849702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1033800	chr6:140786914-140844320	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1021127	chr6:140786914-140852961	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604770	chr6:140795635-140849702	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
22	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140799400-140809200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:140806200-140811000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140806800-140809200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:140808400-140809200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140808400-140809200	Weak transcription	NHDF-Ad	bronchial
6	chr6:140808400-140815600	Weak transcription	Osteobl	bone
7	chr6:140808600-140811000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:140809000-140809200	ZNF genes & repeats	Aorta	Aorta
9	chr6:140809000-140809400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr6:140809000-140809400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr6:140809000-140809400	ZNF genes & repeats	Ovary	ovary
12	chr6:140809000-140809600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:140809000-140809600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:140809000-140809600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:140809000-140809600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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