Variant report

Variant	rs12524727
Chromosome Location	chr6:140670613-140670614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140670488..140672458-chr6:140677865..140680641,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1113096	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11965946	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966793	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11967431	0.82[EUR][1000 genomes]
rs11969633	0.82[EUR][1000 genomes]
rs12525793	0.83[EUR][1000 genomes]
rs12526277	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12529188	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529729	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1390500	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1496114	0.82[EUR][1000 genomes]
rs17069805	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17069893	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17069935	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17069970	0.88[ASN][1000 genomes]
rs1879097	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2328026	0.90[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2328060	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57789174	0.82[EUR][1000 genomes]
rs59447713	0.82[EUR][1000 genomes]
rs62429779	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62429786	0.94[ASN][1000 genomes]
rs62429787	0.94[ASN][1000 genomes]
rs62429788	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62429789	0.94[ASN][1000 genomes]
rs62429831	0.83[ASN][1000 genomes]
rs62431098	0.82[EUR][1000 genomes]
rs62431099	0.82[EUR][1000 genomes]
rs62431110	0.82[EUR][1000 genomes]
rs62431142	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6914407	0.94[ASN][1000 genomes]
rs732015	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12524727	UTRN	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140668000-140671600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:140668400-140674400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:140668800-140671800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:140669000-140676400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:140670600-140671000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:140670600-140672800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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