Variant report
Variant | rs62429789 |
---|---|
Chromosome Location | chr6:140726566-140726567 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1113096 | 0.84[ASN][1000 genomes] |
rs11965946 | 0.89[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs11966793 | 0.84[ASN][1000 genomes] |
rs11967431 | 0.82[ASN][1000 genomes] |
rs12524727 | 0.94[ASN][1000 genomes] |
rs12525793 | 0.82[ASN][1000 genomes] |
rs12526277 | 0.81[ASN][1000 genomes] |
rs12529188 | 0.97[ASN][1000 genomes] |
rs12529729 | 0.90[ASN][1000 genomes] |
rs1496114 | 0.82[ASN][1000 genomes] |
rs1580734 | 0.82[ASN][1000 genomes] |
rs17069893 | 0.84[ASN][1000 genomes] |
rs17069935 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs17069970 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2328060 | 0.95[ASN][1000 genomes] |
rs57789174 | 0.82[ASN][1000 genomes] |
rs59447713 | 0.82[ASN][1000 genomes] |
rs62429779 | 0.89[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs62429786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62429787 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62429788 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62429831 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs62431110 | 0.82[ASN][1000 genomes] |
rs62431142 | 0.85[ASN][1000 genomes] |
rs6914407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs732015 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1016532 | chr6:140174639-141029988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv1015293 | chr6:140544956-140798437 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv817390 | chr6:140558103-141166039 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv432965 | chr6:140692307-140866307 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv604767 | chr6:140701423-140816108 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv886694 | chr6:140701423-141001420 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:140706400-140727000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |