Variant report

Variant	rs1580734
Chromosome Location	chr6:140509971-140509972
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140469028..140473078-chr6:140508512..140512504,3	K562	blood:
2	chr6:140503911..140507978-chr6:140508654..140513269,4	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1113096	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965946	0.82[ASN][1000 genomes]
rs11966793	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967431	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969633	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525793	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526277	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12529188	0.82[ASN][1000 genomes]
rs12529620	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529729	0.90[ASN][1000 genomes]
rs1390500	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496114	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069805	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069893	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17069935	0.82[ASN][1000 genomes]
rs1879097	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328026	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328060	0.84[ASN][1000 genomes]
rs57789174	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59447713	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60747543	0.85[ASN][1000 genomes]
rs62429525	0.87[EUR][1000 genomes]
rs62429779	0.82[ASN][1000 genomes]
rs62429786	0.82[ASN][1000 genomes]
rs62429787	0.82[ASN][1000 genomes]
rs62429788	0.82[ASN][1000 genomes]
rs62429789	0.82[ASN][1000 genomes]
rs62431068	0.86[AMR][1000 genomes]
rs62431098	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62431099	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62431110	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62431142	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914407	0.82[ASN][1000 genomes]
rs6915764	0.85[ASN][1000 genomes]
rs732015	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140497000-140516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140505800-140513000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140506000-140511200	Weak transcription	Ovary	ovary
4	chr6:140509400-140510000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:140509800-140510000	ZNF genes & repeats	K562	blood

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