Variant report
| Variant | rs12529620 |
|---|---|
| Chromosome Location | chr6:140613789-140613790 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1113096 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11965946 | 0.82[ASN][1000 genomes] |
| rs11966793 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11967431 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11969633 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12525793 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12526277 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12529188 | 0.82[ASN][1000 genomes] |
| rs12529729 | 0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1390500 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1496114 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1580734 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17069805 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17069893 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17069935 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1879097 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2328026 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2328060 | 0.83[ASN][1000 genomes] |
| rs57789174 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59447713 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62429779 | 0.82[ASN][1000 genomes] |
| rs62431098 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62431099 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62431110 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62431142 | 0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs732015 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016532 | chr6:140174639-141029988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1015293 | chr6:140544956-140798437 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv817390 | chr6:140558103-141166039 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:140606800-140614600 | Weak transcription | Fetal Heart | heart |
| 2 | chr6:140610800-140624600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
