Variant report

Variant	rs36052012
Chromosome Location	chr10:26680583-26680584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11015081	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015088	0.97[ASN][1000 genomes]
rs11015090	0.85[ASN][1000 genomes]
rs1981130	0.85[ASN][1000 genomes]
rs35025344	0.94[ASN][1000 genomes]
rs55949416	0.97[ASN][1000 genomes]
rs7090537	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs955572	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2760104	chr10:26679548-26693124	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26665800-26680600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26680000-26680800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:26680200-26680800	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:26680400-26680600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
5	chr10:26680400-26680600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr10:26680400-26680600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:26680400-26680600	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:26680400-26680600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:26680400-26680600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:26680400-26680600	Bivalent Enhancer	Fetal Brain Female	brain
11	chr10:26680400-26680800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
12	chr10:26680400-26680800	Enhancers	Primary B cells from cord blood	blood
13	chr10:26680400-26681200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:26680400-26681200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chr10:26680400-26681200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr10:26680400-26681400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr10:26680400-26681400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr10:26680400-26681400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
19	chr10:26680400-26681400	Active TSS	Thymus	Thymus
20	chr10:26680400-26681600	Active TSS	Primary T cells from cord blood	blood
21	chr10:26680400-26681800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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