Variant report
| Variant | rs11015090 |
|---|---|
| Chromosome Location | chr10:26691531-26691532 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10764608 | 0.96[EUR][1000 genomes] |
| rs10764609 | 0.96[EUR][1000 genomes] |
| rs10828986 | 0.95[EUR][1000 genomes] |
| rs11015081 | 0.85[ASN][1000 genomes] |
| rs11015082 | 0.85[ASN][1000 genomes] |
| rs11015088 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11015092 | 0.96[EUR][1000 genomes] |
| rs12264724 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1981130 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2006664 | 0.97[EUR][1000 genomes] |
| rs2992300 | 0.96[EUR][1000 genomes] |
| rs2992305 | 0.96[EUR][1000 genomes] |
| rs3006778 | 0.86[EUR][1000 genomes] |
| rs35025344 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs36052012 | 0.85[ASN][1000 genomes] |
| rs4749123 | 0.97[EUR][1000 genomes] |
| rs5010812 | 0.97[EUR][1000 genomes] |
| rs55949416 | 0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6482559 | 0.96[EUR][1000 genomes] |
| rs7073879 | 0.96[EUR][1000 genomes] |
| rs7074021 | 0.96[EUR][1000 genomes] |
| rs7090537 | 0.84[ASN][1000 genomes] |
| rs7917375 | 0.96[EUR][1000 genomes] |
| rs7918293 | 0.96[EUR][1000 genomes] |
| rs945296 | 0.96[EUR][1000 genomes] |
| rs945297 | 0.96[EUR][1000 genomes] |
| rs945298 | 0.96[EUR][1000 genomes] |
| rs955572 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043832 | chr10:26669040-26809400 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2760104 | chr10:26679548-26693124 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv6121 | chr10:26683702-26697307 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26681600-26694200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
