Variant report
| Variant | rs945298 |
|---|---|
| Chromosome Location | chr10:26704666-26704667 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-APBB1IP-4 | chr10:26704526-26704771 | NONHSAT011824 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10764608 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10764609 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10828986 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11015088 | 0.85[EUR][1000 genomes] |
| rs11015090 | 0.96[EUR][1000 genomes] |
| rs11015092 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12264724 | 0.95[EUR][1000 genomes] |
| rs1981130 | 0.97[EUR][1000 genomes] |
| rs2006664 | 0.99[EUR][1000 genomes] |
| rs2992300 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2992305 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3006778 | 0.85[EUR][1000 genomes] |
| rs35025344 | 0.85[EUR][1000 genomes] |
| rs4749123 | 0.99[EUR][1000 genomes] |
| rs5010812 | 0.99[EUR][1000 genomes] |
| rs55949416 | 0.85[EUR][1000 genomes] |
| rs6482559 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7073879 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7074021 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7917375 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7918293 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs945296 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs945297 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043832 | chr10:26669040-26809400 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26704200-26705000 | Enhancers | Fetal Thymus | thymus |
| 2 | chr10:26704200-26705200 | Enhancers | Thymus | Thymus |
