Variant report

Variant	rs2992300
Chromosome Location	chr10:26702536-26702537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10764608	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828986	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11015088	0.85[EUR][1000 genomes]
rs11015090	0.96[EUR][1000 genomes]
rs11015092	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264724	0.95[EUR][1000 genomes]
rs1981130	0.97[EUR][1000 genomes]
rs2006664	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2992305	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006778	0.85[EUR][1000 genomes]
rs35025344	0.85[EUR][1000 genomes]
rs4749123	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5010812	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55949416	0.85[EUR][1000 genomes]
rs6482559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073879	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074021	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7917375	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918293	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945297	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945298	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26701600-26702600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26701600-26702600	Enhancers	GM12878-XiMat	blood
3	chr10:26702400-26702600	Enhancers	Thymus	Thymus

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