Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10764608	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10764609	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10828986	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015088	0.86[EUR][1000 genomes]
rs11015090	0.97[EUR][1000 genomes]
rs11015092	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12264724	0.96[EUR][1000 genomes]
rs1981130	0.97[EUR][1000 genomes]
rs2006664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2992300	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2992305	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3006778	0.86[EUR][1000 genomes]
rs35025344	0.86[EUR][1000 genomes]
rs4749123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55949416	0.86[EUR][1000 genomes]
rs6482559	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7073879	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7074021	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917375	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7918293	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs945296	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs945297	0.99[EUR][1000 genomes]
rs945298	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26696400-26699600	Enhancers	GM12878-XiMat	blood
2	chr10:26697000-26699600	Enhancers	A549	lung
3	chr10:26697400-26701800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:26697600-26698600	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:26698000-26698600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:26698400-26701600	Weak transcription	Primary monocytes fromperipheralblood	blood

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