Variant report

Variant	rs36052726
Chromosome Location	chr12:48853790-48853791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11168600	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12367792	1.00[ASN][1000 genomes]
rs34702987	1.00[ASN][1000 genomes]
rs35323818	1.00[ASN][1000 genomes]
rs73104702	1.00[ASN][1000 genomes]
rs7315024	1.00[ASN][1000 genomes]
rs7961622	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48851800-48854800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:48851800-48855000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:48851800-48855400	Weak transcription	Pancreas	Pancrea
4	chr12:48852600-48854000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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