Variant report

Variant	rs7315024
Chromosome Location	chr12:48965211-48965212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11168600	1.00[ASN][1000 genomes]
rs12367792	1.00[ASN][1000 genomes]
rs12814893	1.00[ASN][1000 genomes]
rs34702987	1.00[ASN][1000 genomes]
rs35323818	1.00[ASN][1000 genomes]
rs36052726	1.00[ASN][1000 genomes]
rs3730308	1.00[ASN][1000 genomes]
rs73104702	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48964400-48965600	Weak transcription	Brain Hippocampus Middle	brain
2	chr12:48964400-48965600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:48964400-48965800	Weak transcription	Brain Anterior Caudate	brain
4	chr12:48964400-48966000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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