Variant report

Variant	rs36056428
Chromosome Location	chr17:38755409-38755410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38744707..38750068-chr17:38751883..38757050,6	MCF-7	breast:
2	chr17:38751985..38754431-chr17:38755314..38757627,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73983094	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38739400-38756800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:38751000-38759600	Enhancers	Primary B cells from peripheral blood	blood
3	chr17:38751000-38759800	Enhancers	Primary B cells from cord blood	blood
4	chr17:38752200-38755800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:38752600-38761800	Enhancers	Fetal Thymus	thymus
6	chr17:38753000-38757000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:38753600-38756000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr17:38753800-38755800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:38753800-38756000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr17:38754000-38756000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:38754000-38756000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr17:38754000-38756400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:38754000-38756600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr17:38754000-38758000	Enhancers	Primary T cells from cord blood	blood
15	chr17:38754200-38755600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr17:38754200-38755800	Bivalent Enhancer	HepG2	liver
17	chr17:38754400-38755600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr17:38754400-38756400	Enhancers	Adipose Nuclei	Adipose
19	chr17:38754600-38755800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:38754800-38756600	Weak transcription	Thymus	Thymus
21	chr17:38755000-38755600	Enhancers	GM12878-XiMat	blood
22	chr17:38755000-38755800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr17:38755000-38755800	Active TSS	Duodenum Mucosa	Duodenum
24	chr17:38755000-38756200	Enhancers	Hela-S3	cervix
25	chr17:38755000-38757000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr17:38755000-38761000	Weak transcription	Spleen	Spleen
27	chr17:38755200-38755600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr17:38755200-38755600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr17:38755200-38755600	Flanking Active TSS	Osteobl	bone
30	chr17:38755200-38755800	Enhancers	HSMMtube	muscle
31	chr17:38755200-38755800	Enhancers	K562	blood
32	chr17:38755200-38756000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
33	chr17:38755200-38756000	Weak transcription	Small Intestine	intestine
34	chr17:38755200-38756200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:38755200-38763600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr17:38755400-38755600	Enhancers	Liver	Liver
37	chr17:38755400-38756000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr17:38755400-38756000	Enhancers	Fetal Kidney	kidney
39	chr17:38755400-38758800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr17:38755400-38758800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr17:38755400-38759200	Enhancers	Primary T cells fromperipheralblood	blood
42	chr17:38755400-38763800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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