Variant report

Variant	rs73983094
Chromosome Location	chr17:38752753-38752754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38752435..38754390-chr17:38756403..38758557,2	MCF-7	breast:
2	chr17:38732130..38734086-chr17:38752547..38754393,2	MCF-7	breast:
3	chr17:38744707..38750068-chr17:38751883..38757050,6	MCF-7	breast:
4	chr17:38746999..38748985-chr17:38751027..38753482,2	K562	blood:
5	chr17:38751255..38752916-chr17:38763179..38764693,2	MCF-7	breast:
6	chr17:38752670..38754395-chr17:38780579..38783063,2	K562	blood:
7	chr17:38751985..38754431-chr17:38755314..38757627,2	K562	blood:
8	chr17:38750576..38753214-chr17:38759339..38761805,2	K562	blood:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16966101	1.00[ASN][1000 genomes]
rs36056428	1.00[AFR][1000 genomes]
rs803123	1.00[ASN][1000 genomes]
rs9908562	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38739400-38756800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:38749800-38753800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr17:38750000-38753600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr17:38750200-38754400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr17:38750400-38752800	Enhancers	Primary T cells from cord blood	blood
6	chr17:38750400-38754400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:38750600-38752800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr17:38750800-38752800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr17:38751000-38759600	Enhancers	Primary B cells from peripheral blood	blood
10	chr17:38751000-38759800	Enhancers	Primary B cells from cord blood	blood
11	chr17:38751600-38754400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:38751800-38753400	Enhancers	Liver	Liver
13	chr17:38751800-38754600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:38751800-38755000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr17:38752000-38753200	Enhancers	HepG2	liver
16	chr17:38752000-38753800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:38752000-38753800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:38752000-38754000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr17:38752200-38752800	Enhancers	Adipose Nuclei	Adipose
20	chr17:38752200-38753000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:38752200-38755000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:38752200-38755800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:38752400-38753000	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
24	chr17:38752400-38755200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:38752600-38752800	Enhancers	Primary hematopoietic stem cells	blood
26	chr17:38752600-38752800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr17:38752600-38752800	Enhancers	A549	lung
28	chr17:38752600-38761800	Enhancers	Fetal Thymus	thymus

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