Variant report

Variant	rs9908562
Chromosome Location	chr17:38736362-38736363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38598181..38600356-chr17:38736010..38737648,2	K562	blood:
2	chr17:38731734..38734679-chr17:38735950..38739366,5	MCF-7	breast:
3	chr17:38736015..38738608-chr17:38768869..38770773,2	K562	blood:
4	chr17:38735976..38740811-chr17:38759775..38765396,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16966101	1.00[ASN][1000 genomes]
rs73983094	1.00[ASN][1000 genomes]
rs803123	1.00[ASN][1000 genomes]
rs803129	1.00[AFR][1000 genomes]
rs803130	1.00[AFR][1000 genomes]
rs803131	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38723000-38738000	Weak transcription	Thymus	Thymus
2	chr17:38725000-38738600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:38731800-38738000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr17:38731800-38738000	Weak transcription	Psoas Muscle	Psoas
5	chr17:38732200-38738400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:38732800-38737200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr17:38733000-38737400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr17:38733200-38736800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:38733200-38738000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr17:38734200-38736600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:38734200-38737200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr17:38734200-38737200	Weak transcription	Adipose Nuclei	Adipose
13	chr17:38734200-38737200	Weak transcription	Esophagus	oesophagus
14	chr17:38734400-38737000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:38734400-38737200	Weak transcription	Left Ventricle	heart
16	chr17:38734400-38737200	Weak transcription	Spleen	Spleen
17	chr17:38734400-38737400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr17:38734600-38737200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:38734600-38737200	Weak transcription	Fetal Thymus	thymus
20	chr17:38734800-38737000	Weak transcription	Primary B cells from cord blood	blood
21	chr17:38734800-38737000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr17:38735600-38738600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:38735800-38737400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr17:38735800-38738000	Enhancers	Primary T cells from cord blood	blood
25	chr17:38735800-38738200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr17:38735800-38738400	Enhancers	Primary T cells fromperipheralblood	blood
27	chr17:38735800-38738400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr17:38735800-38738400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:38735800-38738600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr17:38736200-38737200	Weak transcription	GM12878-XiMat	blood
31	chr17:38736200-38738000	Weak transcription	Lung	lung
32	chr17:38736200-38738600	Weak transcription	Gastric	stomach
33	chr17:38736200-38740000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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