Variant report

Variant	rs36060212
Chromosome Location	chr3:135885163-135885164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135884006..135886547-chr3:135914260..135916079,2	K562	blood:
2	chr3:135874306..135876384-chr3:135885061..135886909,2	MCF-7	breast:
3	chr3:135876607..135878545-chr3:135883402..135885999,2	K562	blood:
4	chr3:135884038..135885594-chr3:135912255..135915096,2	MCF-7	breast:
5	chr3:135883996..135885511-chr3:135967463..135969334,2	MCF-7	breast:
6	chr3:135883267..135885538-chr3:135968468..135971038,3	K562	blood:

Variant related genes	Relation type
ENSG00000241438	Chromatin interaction
ENSG00000174579	Chromatin interaction
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13066914	1.00[ASN][1000 genomes]
rs13097248	1.00[ASN][1000 genomes]
rs66895236	1.00[AFR][1000 genomes]
rs67709813	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv877518	chr3:135861666-135885554	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv967232	chr3:135871526-135887926	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
2	chr3:135864400-135885200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:135870800-135895200	Weak transcription	Fetal Intestine Small	intestine
4	chr3:135871000-135897600	Weak transcription	Aorta	Aorta
5	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
6	chr3:135871400-135885600	Weak transcription	Fetal Kidney	kidney
7	chr3:135872000-135887800	Weak transcription	HSMM	muscle
8	chr3:135872200-135891400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:135872800-135885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:135872800-135903600	Weak transcription	Thymus	Thymus
11	chr3:135873600-135889800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:135874400-135887400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:135874800-135890200	Weak transcription	Spleen	Spleen
14	chr3:135874800-135897600	Weak transcription	Gastric	stomach
15	chr3:135876400-135890200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:135879000-135890000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:135880000-135906600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:135880200-135889000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:135881200-135889600	Weak transcription	Osteobl	bone
20	chr3:135881400-135888200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:135881400-135890200	Weak transcription	Lung	lung
22	chr3:135881600-135887000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:135882200-135886400	Enhancers	Primary B cells from cord blood	blood
24	chr3:135882200-135886400	Enhancers	Primary T cells from cord blood	blood
25	chr3:135882200-135887000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr3:135882200-135887800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:135882200-135888600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:135882200-135889000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr3:135882600-135889600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:135882600-135890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:135882800-135885600	Weak transcription	Fetal Heart	heart
32	chr3:135882800-135890200	Weak transcription	Esophagus	oesophagus
33	chr3:135882800-135890200	Weak transcription	Right Atrium	heart
34	chr3:135882800-135893000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:135882800-135905200	Weak transcription	Fetal Muscle Leg	muscle
36	chr3:135883200-135890000	Weak transcription	Adipose Nuclei	Adipose
37	chr3:135883400-135885200	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:135883400-135885400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:135883400-135887800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr3:135883400-135889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:135883400-135889600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr3:135883400-135889600	Weak transcription	HUVEC	blood vessel
43	chr3:135883400-135889800	Weak transcription	Brain Angular Gyrus	brain
44	chr3:135883400-135890000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:135883400-135892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:135883400-135901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:135883600-135885200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:135883600-135885200	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:135883600-135885400	Weak transcription	HSMMtube	muscle
50	chr3:135883600-135885600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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