Variant report

Variant	rs36089168
Chromosome Location	chr14:103985726-103985727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:103985364..103989946-chr14:104026445..104030227,8	MCF-7	breast:
2	chr14:103402292..103404348-chr14:103984211..103986601,2	K562	blood:
3	chr14:103963760..103966397-chr14:103985638..103989760,5	K562	blood:
4	chr14:103967683..103970600-chr14:103983071..103986028,2	MCF-7	breast:
5	chr14:103984635..103986409-chr14:104012608..104013744,13	MCF-7	breast:
6	chr14:103983696..103988397-chr14:104026059..104029809,6	K562	blood:
7	chr1:41848271..41849049-chr14:103985006..103985947,2	Hela-S3	cervix:
8	chr14:103984597..103986282-chr14:104012561..104013842,22	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126214	Chromatin interaction
ENSG00000166170	Chromatin interaction
ENSG00000256053	Chromatin interaction
ENSG00000075413	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35683215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56107951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56355095	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59233542	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59481765	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60627181	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61296144	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084508	1.00[AMR][1000 genomes]
rs74085958	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086001	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
3	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	esv1835815	chr14:103942991-103989757	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
5	nsv1044967	chr14:103954727-104007051	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv1807091	chr14:103956182-104020454	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv1835824	chr14:103956182-104020454	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	esv1818859	chr14:103967299-103989757	Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
11	esv1833254	chr14:103967299-103989757	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
12	esv1835374	chr14:103967299-103989757	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
13	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
15	esv1834605	chr14:103969909-104003091	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
16	nsv902301	chr14:103979953-104003094	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
17	esv1850440	chr14:103979953-104007555	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
18	nsv902302	chr14:103979953-104018455	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
19	nsv902303	chr14:103979953-104034746	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
20	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
21	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
22	nsv827068	chr14:103982866-104021347	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
23	nsv902306	chr14:103984294-104003094	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
24	esv1835145	chr14:103984294-104014935	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103971600-103987000	Weak transcription	Small Intestine	intestine
2	chr14:103971800-103985800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:103972000-103987000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:103977000-103986800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:103977000-103987000	Weak transcription	Dnd41	blood
6	chr14:103980000-103987200	Weak transcription	Aorta	Aorta
7	chr14:103980000-103988400	Weak transcription	Fetal Kidney	kidney
8	chr14:103980200-103987000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:103980200-103987000	Weak transcription	HSMM	muscle
10	chr14:103980400-103987200	Weak transcription	HSMMtube	muscle
11	chr14:103982600-103987400	Enhancers	Fetal Heart	heart
12	chr14:103982800-103986800	Enhancers	Brain Angular Gyrus	brain
13	chr14:103982800-103987600	Enhancers	Fetal Brain Male	brain
14	chr14:103983000-103986200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:103983000-103986800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:103983000-103987600	Enhancers	Fetal Lung	lung
17	chr14:103983400-103986200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr14:103983400-103986600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:103983400-103986800	Enhancers	Placenta	Placenta
20	chr14:103983400-103987000	Enhancers	HMEC	breast
21	chr14:103983400-103987400	Enhancers	Spleen	Spleen
22	chr14:103983600-103987000	Enhancers	Pancreas	Pancrea
23	chr14:103983800-103987000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr14:103984000-103985800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:103984000-103985800	Enhancers	Brain Cingulate Gyrus	brain
26	chr14:103984000-103986000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr14:103984000-103986200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:103984000-103986400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:103984000-103986800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:103984000-103987000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:103984000-103987200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr14:103984200-103986200	Enhancers	Left Ventricle	heart
33	chr14:103984200-103986800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr14:103984200-103987000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:103984200-103987200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:103984200-103987200	Enhancers	Stomach Mucosa	stomach
37	chr14:103984200-103987200	Enhancers	NH-A	brain
38	chr14:103984400-103985800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr14:103984400-103986000	Enhancers	NHEK	skin
40	chr14:103984400-103986400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:103984400-103986800	Enhancers	Right Atrium	heart
42	chr14:103984400-103987000	Enhancers	Adipose Nuclei	Adipose
43	chr14:103984400-103987000	Enhancers	Duodenum Mucosa	Duodenum
44	chr14:103984400-103987000	Enhancers	Esophagus	oesophagus
45	chr14:103984400-103987200	Enhancers	Liver	Liver
46	chr14:103984400-103987200	Genic enhancers	NHLF	lung
47	chr14:103984600-103985800	Genic enhancers	Fetal Stomach	stomach
48	chr14:103984600-103986000	Enhancers	A549	lung
49	chr14:103984600-103986200	Enhancers	HUVEC	blood vessel
50	chr14:103984600-103987000	Enhancers	Primary hematopoietic stem cells	blood

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