Variant report

Variant	rs74084508
Chromosome Location	chr14:103875053-103875054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:103874646..103876985-chr14:103887781..103889721,2	MCF-7	breast:
2	chr14:103799851..103802065-chr14:103872940..103875846,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100664	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35683215	1.00[AMR][1000 genomes]
rs36089168	1.00[AMR][1000 genomes]
rs56107951	1.00[AMR][1000 genomes]
rs56195804	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56355095	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59233542	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59481765	1.00[AMR][1000 genomes]
rs60627181	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61296144	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086001	1.00[AMR][1000 genomes]
rs8006992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103861000-103882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:103862000-103919400	Weak transcription	Colonic Mucosa	Colon
3	chr14:103866600-103883400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:103868400-103878400	Weak transcription	Fetal Kidney	kidney
5	chr14:103868400-103880000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:103868400-103883200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:103868400-103883800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:103868600-103883200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:103869200-103878400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:103869600-103882800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:103870600-103878400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:103870800-103883200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:103870800-103883200	Weak transcription	HSMMtube	muscle
14	chr14:103871000-103875200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:103871000-103875200	Strong transcription	GM12878-XiMat	blood
16	chr14:103871000-103875400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:103871000-103878000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:103871000-103878600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:103871000-103883000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:103871000-103883200	Weak transcription	Aorta	Aorta
21	chr14:103871000-103883600	Strong transcription	Dnd41	blood
22	chr14:103871000-103884400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:103871200-103878400	Weak transcription	Esophagus	oesophagus
24	chr14:103871200-103878600	Weak transcription	NHLF	lung
25	chr14:103871200-103880000	Weak transcription	NHDF-Ad	bronchial
26	chr14:103871400-103875200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:103871400-103875200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:103871400-103875400	Strong transcription	Fetal Intestine Large	intestine
29	chr14:103871400-103875400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr14:103871400-103875400	Strong transcription	Fetal Muscle Leg	muscle
31	chr14:103871400-103875400	Strong transcription	Fetal Thymus	thymus
32	chr14:103871400-103875600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:103871400-103878000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:103871400-103879600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr14:103871400-103881200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr14:103871400-103881400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr14:103871400-103882800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:103871600-103875400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr14:103871600-103883200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:103871600-103883400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr14:103871800-103875400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:103872000-103883200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:103872200-103876600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:103872200-103883800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr14:103872400-103875400	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr14:103872600-103878200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:103873000-103875600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:103873200-103875200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:103873200-103875600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr14:103873200-103881000	Strong transcription	Primary T cells from cord blood	blood

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